View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_279 (Length: 240)
Name: NF0412_low_279
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_279 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 41705132 - 41705274
Alignment:
| Q |
23 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnnncaaata--ctgtttaaccaaatg |
120 |
Q |
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| T |
41705132 |
atcatcacacaccactccatctacaaattcaaaaactcttctc--ctctctgtattcaagttccaacac-aaaaaaacaaataccctgtttaaccaaatg |
41705228 |
T |
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| Q |
121 |
gcttctcccctgttatttctcctcatcatcacactcttcatctcac |
166 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
41705229 |
gcttctcccctgttatttctcctcctcatcacactcttcatttcac |
41705274 |
T |
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