View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_28 (Length: 435)
Name: NF0412_low_28
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 293
Target Start/End: Complemental strand, 31264197 - 31263934
Alignment:
| Q |
30 |
ctatgtttttgatgaaatgtttcaaagaatgtttcatttgttttttatgttccttgctgtgtagatatatctaacgacgttggtaggcttctactcggta |
129 |
Q |
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| T |
31264197 |
ctatgtttttgatgaaatgtttcagagaatgtttcatttgttttttatgttcgttgttgtgtagatatatctgacgatgttggtaggcttcgactcggta |
31264098 |
T |
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| Q |
130 |
ggtagagccaacataactttgtatgtaaggtaaatgatgcagttaatcctccccctaaacgggactgacgtaggcatcagactcnnnnnnncgatgagtc |
229 |
Q |
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| T |
31264097 |
ggtagagtcaacataactttgtatgtaaggcaaatgatgcagttaatcctccccctaaacgggactgacgtaggcatctgactcaaaacgacgatgagtc |
31263998 |
T |
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| Q |
230 |
aaactcctcataagtggttgagcctacacctgttgcgcataaggagtatctagacgatgttttc |
293 |
Q |
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| T |
31263997 |
aaactcctcataagtggttgagcctacacctgttgcgcataaggagtatctagacgatgttttc |
31263934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 31263868 - 31263807
Alignment:
| Q |
362 |
tgacaatcttatggaatacggtggtgggccttctgattattctccacttcttaatttgtctc |
423 |
Q |
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| T |
31263868 |
tgacaatcttatggaatacggtggtgggccttctgattattctccacttcttaatttgtctc |
31263807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 1802956 - 1802867
Alignment:
| Q |
37 |
tttgatgaaatgtttcaaagaatgtttcatttgtt-ttttatgttccttgctgtgtagatatatctaacgacgttggtaggcttctactc |
125 |
Q |
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| T |
1802956 |
tttgatgaaatgtgtcaaaggatgtttcattgattcttttatgttggttgttatgtagatatatcaaacgaggttggtaggcttatactc |
1802867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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