View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_288 (Length: 231)
Name: NF0412_low_288
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_288 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 30941977 - 30941819
Alignment:
| Q |
20 |
taagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatct |
119 |
Q |
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| T |
30941977 |
taagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatct |
30941878 |
T |
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| Q |
120 |
cttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatgatgt |
178 |
Q |
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| T |
30941877 |
cttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatgatgt |
30941819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 37974981 - 37974937
Alignment:
| Q |
95 |
gtattgaccaaaagtgttccaatctcttctcttttgtgattcgta |
139 |
Q |
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| T |
37974981 |
gtattgaccaaaagtgttccaatcacgtctcttttgtgactcgta |
37974937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 39556472 - 39556357
Alignment:
| Q |
36 |
tccaaaacatggttgctattgcactgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgatt |
135 |
Q |
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| T |
39556472 |
tccaacacatggttggaattgcagtgagaaagtggaacgggtggtcttaggttgtttaagtattgaccaaaagtgttccaatctcttctcttttgagatt |
39556373 |
T |
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| Q |
136 |
cgtagcgactaagtgt |
151 |
Q |
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| T |
39556372 |
catagcggctaagtgt |
39556357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 32002342 - 32002397
Alignment:
| Q |
93 |
aagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaag |
148 |
Q |
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| T |
32002342 |
aagtattgtccaaaagtgttccaatctcttctcttttgtgactcgtatcgactaag |
32002397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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