View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_290 (Length: 229)

Name: NF0412_low_290
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_290
NF0412_low_290
[»] chr1 (1 HSPs)
chr1 (52-225)||(25642553-25642726)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 25642553 - 25642726
Alignment:
Q  52 aataaaagaaatgagtgaagttaaaatctgcatattatgttggctatctagttttcctttcactgtcctgagtttagcagatatcaaaaagaaggtattg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25642553 aataaaagaaatgagtgaagttaaaatctgcatattatgttggctatctagttttcctttcactgtcctgagtttagcagatatcaaaaagaaggtattg 25642652  T
Q  152 gcacggtacagaaagcattgggtcaaaaagatacatgcattcccttcactgcaattgcacttccttatattctt 225  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25642653 gcacggtacataaagcattgggtcaaaaagatacatgcattcccttcactgcaattgcacttccttatattctt 25642726  T

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