View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_296 (Length: 224)
Name: NF0412_low_296
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_296 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 31063712 - 31063583
Alignment:
| Q |
1 |
aatggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagttgctttggtgctgacgtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
31063712 |
aatggtaccataaaaggaggttcaccaagagctagagttgcaacctacaaagtgtgctggtctctaacagatgccgctagttgctttggtgctgatgtat |
31063613 |
T |
|
| Q |
101 |
tatctgctattgatcaagcaattgatgatg |
130 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31063612 |
tatctgctattgatcaagcaattgatgatg |
31063583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 31108799 - 31108670
Alignment:
| Q |
1 |
aatggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagttgctttggtgctgacgtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
31108799 |
aatggtaccataaaaggaggttcaccaagagctagagttgcaacctacaaagtgtgctggtctctaacagatgccactagttgctttggtgctgatgtat |
31108700 |
T |
|
| Q |
101 |
tatctgctattgatcaagcaattgatgatg |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
31108699 |
tatctgctattgatcaagcaattgatgatg |
31108670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 31146546 - 31146427
Alignment:
| Q |
4 |
ggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctag-ttgctttggtgctgacgtatta |
102 |
Q |
| |
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|||||||||||||| |||||||||||| | || |||||||||||||||| |||||||||||||| |||| || ||| ||||||||||| || |||||| |
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| T |
31146546 |
ggtaccataaaaggtggttcaccaagatcaagagttgcaacctacaaagcatgttggtctctaacagatgttg-tagactgctttggtgccgatgtatta |
31146448 |
T |
|
| Q |
103 |
tctgctattgatcaagcaatt |
123 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
31146447 |
gctgctattgatcaagcaatt |
31146427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 31164372 - 31164253
Alignment:
| Q |
4 |
ggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctag-ttgctttggtgctgacgtatta |
102 |
Q |
| |
|
|||||||||||||| |||||||||||| | || |||||||||||||||| |||||||||||||| |||| || ||| ||||| ||||| || |||||| |
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| T |
31164372 |
ggtaccataaaaggtggttcaccaagatcaagagttgcaacctacaaagcatgttggtctctaacagatgttg-tagactgcttcggtgccgatgtatta |
31164274 |
T |
|
| Q |
103 |
tctgctattgatcaagcaatt |
123 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
31164273 |
gctgctattgatcaagcaatt |
31164253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31201456 - 31201520
Alignment:
| Q |
1 |
aatggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctct |
65 |
Q |
| |
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|||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
31201456 |
aatggtactgtaaaaggtggttcgccaagagctagggttgcaacctacaaagtgtgctggtctct |
31201520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31051259 - 31051196
Alignment:
| Q |
1 |
aatggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctc |
64 |
Q |
| |
|
||||||||||| ||||| |||||||||| | | || |||| ||||||||||||||||||||||| |
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| T |
31051259 |
aatggtaccattaaaggtggttcaccaaaatcaagagttgtaacctacaaagtgtgttggtctc |
31051196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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