View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_299 (Length: 222)
Name: NF0412_low_299
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_299 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 31063777 - 31063583
Alignment:
| Q |
20 |
gtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttggtattggcaatggtaccataaaaggaggttcaccaagagctag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31063777 |
gtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttaacattggaaatggtaccataaaaggaggttcaccaagagctag |
31063678 |
T |
|
| Q |
120 |
ggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagttgctttggtgctgacgtattatctgctattgatcaagcaattgatgatg |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31063677 |
agttgcaacctacaaagtgtgctggtctctaacagatgccgctagttgctttggtgctgatgtattatctgctattgatcaagcaattgatgatg |
31063583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 31108864 - 31108670
Alignment:
| Q |
20 |
gtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttggtattggcaatggtaccataaaaggaggttcaccaagagctag |
119 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31108864 |
gtactcacacactatcaacagctggtggaaatttcgtaccaggtgcaagcatatttaacattggaaatggtaccataaaaggaggttcaccaagagctag |
31108765 |
T |
|
| Q |
120 |
ggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagttgctttggtgctgacgtattatctgctattgatcaagcaattgatgatg |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31108764 |
agttgcaacctacaaagtgtgctggtctctaacagatgccactagttgctttggtgctgatgtattatctgctattgatcaagcaattgatgatg |
31108670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 31051324 - 31051196
Alignment:
| Q |
20 |
gtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttggtattggcaatggtaccataaaaggaggttcaccaagagctag |
119 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| | | || |
|
|
| T |
31051324 |
gtactcacacactatcaacagctggtggaaacttcgtaccaggtgcaagcatatttggtatcggcaatggtaccattaaaggtggttcaccaaaatcaag |
31051225 |
T |
|
| Q |
120 |
ggttgcaacctacaaagtgtgttggtctc |
148 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
31051224 |
agttgtaacctacaaagtgtgttggtctc |
31051196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 31146606 - 31146427
Alignment:
| Q |
28 |
acactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttggtattggcaatggtaccataaaaggaggttcaccaagagctagggttgcaa |
127 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||| |||||||||||||||||| |||||||||||||| |||||||||||| | || ||||||| |
|
|
| T |
31146606 |
acactatcaacagcaggtggaaacttcgtacaaaacgcaaccatatttggtattggcaacggtaccataaaaggtggttcaccaagatcaagagttgcaa |
31146507 |
T |
|
| Q |
128 |
cctacaaagtgtgttggtctctaaccgatgctgctag-ttgctttggtgctgacgtattatctgctattgatcaagcaatt |
207 |
Q |
| |
|
||||||||| |||||||||||||| |||| || ||| ||||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
31146506 |
cctacaaagcatgttggtctctaacagatgttg-tagactgctttggtgccgatgtattagctgctattgatcaagcaatt |
31146427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 31164432 - 31164253
Alignment:
| Q |
28 |
acactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttggtattggcaatggtaccataaaaggaggttcaccaagagctagggttgcaa |
127 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||| |||||||||||||||||| |||||||||||||| |||||||||||| | || ||||||| |
|
|
| T |
31164432 |
acactatcaacagcaggtggaaacttcgtacaaaacgcaaccatatttggtattggcaacggtaccataaaaggtggttcaccaagatcaagagttgcaa |
31164333 |
T |
|
| Q |
128 |
cctacaaagtgtgttggtctctaaccgatgctgctag-ttgctttggtgctgacgtattatctgctattgatcaagcaatt |
207 |
Q |
| |
|
||||||||| |||||||||||||| |||| || ||| ||||| ||||| || |||||| |||||||||||||||||||| |
|
|
| T |
31164332 |
cctacaaagcatgttggtctctaacagatgttg-tagactgcttcggtgccgatgtattagctgctattgatcaagcaatt |
31164253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 31201391 - 31201520
Alignment:
| Q |
20 |
gtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttggtattggcaatggtaccataaaaggaggttcaccaagagctag |
119 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||| ||||||| |||||| |||||| ||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
31201391 |
gtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaaaaggtggttcgccaagagctag |
31201490 |
T |
|
| Q |
120 |
ggttgcaacctacaaagtgtgttggtctct |
149 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
31201491 |
ggttgcaacctacaaagtgtgctggtctct |
31201520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1157 times since January 2019
Visitors: 3076