View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_3 (Length: 619)
Name: NF0412_low_3
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 80 - 550
Target Start/End: Complemental strand, 47419515 - 47419045
Alignment:
| Q |
80 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
179 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419515 |
gagatgaaatgcccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47419416 |
T |
|
| Q |
180 |
tagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttcttct |
279 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419415 |
tagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttcttct |
47419316 |
T |
|
| Q |
280 |
ggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatgcattagcacaactgcatcagagaagcagga |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47419315 |
ggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatgcattagcacaactgcatcagagaagctgga |
47419216 |
T |
|
| Q |
380 |
atgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactatggacatcagtgctaaaaaacctcagga |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419215 |
atgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactatggacatcagtgctaaaaaacctcagga |
47419116 |
T |
|
| Q |
480 |
acatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtccagaaactg |
550 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47419115 |
acatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtcaagaaactg |
47419045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 80 - 550
Target Start/End: Complemental strand, 47391152 - 47390685
Alignment:
| Q |
80 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
179 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47391152 |
gagatgaaatacctaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggtagg |
47391053 |
T |
|
| Q |
180 |
tagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttcttct |
279 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||||||| |
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| T |
47391052 |
cagaatagatgatttttcctaaggtggttagagatagatttcaacgttatgctaagaaccatcctttttattgcagacaaaaaccaatacaggttcttct |
47390953 |
T |
|
| Q |
280 |
ggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatgcattagcacaactgcatcagagaagcagga |
379 |
Q |
| |
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|| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | || |
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| T |
47390952 |
gg---acagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaacgatccccatgcattagcacaactgcatcagagaagtatga |
47390856 |
T |
|
| Q |
380 |
atgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactatggacatcagtgctaaaaaacctcagga |
479 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47390855 |
atgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaacctattcaactatggacatcagtgctaaaaaacctcagga |
47390756 |
T |
|
| Q |
480 |
acatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtccagaaactg |
550 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
47390755 |
acatgatgttcgagtagtgcaatcaaatcaattaccaacatccagttctattgctgttagtcaagaaactg |
47390685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 80 - 550
Target Start/End: Complemental strand, 47421987 - 47421504
Alignment:
| Q |
80 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
179 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47421987 |
gagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47421888 |
T |
|
| Q |
180 |
tagaatagat--------------------gttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaa |
259 |
Q |
| |
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|||||||||| || ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||| |
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| T |
47421887 |
tagaatagatagtttactttatcttacaatgtgttttcttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttctt----acaa |
47421792 |
T |
|
| Q |
260 |
aaaccaacacaggttcttctggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatgcattagcaca |
359 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
47421791 |
aaaccaatacaggttcttctgg---acagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaatggtcctgatgcattagcaca |
47421695 |
T |
|
| Q |
360 |
actgcatcagagaagcaggaatgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactatggacatc |
459 |
Q |
| |
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||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
47421694 |
actacatcagagaagtacgaatgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaagctattcaactatggacatc |
47421595 |
T |
|
| Q |
460 |
agtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtccagaaactg |
550 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| || ||| |||||||| | |||||||||||| | ||||||| |||||||| |
|
|
| T |
47421594 |
agtgctaaaaaatctcaggaacatgatgttcgagtagtggaaccaactcaattactaccatccagttctaacaccattagtcaagaaactg |
47421504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 80 - 490
Target Start/End: Complemental strand, 47408286 - 47407859
Alignment:
| Q |
80 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
179 |
Q |
| |
|
||||||||||| ||||||| || | |||| ||||| ||||||||||||||| |||||||||| |||||| ||||||| || ||||||| ||||||||||| |
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|
| T |
47408286 |
gagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggtagg |
47408187 |
T |
|
| Q |
180 |
tagaata---------------------gatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagaca |
258 |
Q |
| |
|
|||| || |||||||||| |||||| | || | |||| |||||||||||||||||||||| | ||||||||| ||| | |
|
|
| T |
47408186 |
tagagtatgtggtttatgcagccttacagatgtttttt-ttaaggcgattgaatatagatttcaacgttatgctaagaaccattgtttttcttgcagata |
47408088 |
T |
|
| Q |
259 |
aaaaccaacacaggttcttctggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatgcattagcac |
358 |
Q |
| |
|
||| |||| || ||||||||||| ||| |||| |||| |||| || | ||||||||||| | | | || |||||||||||||| ||||| ||| | |
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|
| T |
47408087 |
aaatccaatacgggttcttctgg---acaacagcaccctataagcatgccaactgttacttcaattccagcacaatttaatgatccccatgcaatagtaa |
47407991 |
T |
|
| Q |
359 |
aactgcatcagagaagcaggaatgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactatggacat |
458 |
Q |
| |
|
||||||||| |||||| | |||||| ||||| ||||||||||||||| |||||||| |||||||| |||| || ||| || ||||||||||||||||| |
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|
| T |
47407990 |
aactgcatccgagaagtatgaatgctgctgcggaccattctcataataattcttcagtaatccaagtgaagactgggccgacttattcaactatggacat |
47407891 |
T |
|
| Q |
459 |
cagtgctaaaaaacctcaggaacatgatgttc |
490 |
Q |
| |
|
||| |||||||| |||||||||||||||||| |
|
|
| T |
47407890 |
tagtactaaaaaatctcaggaacatgatgttc |
47407859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 47424696 - 47424609
Alignment:
| Q |
103 |
tttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatg |
190 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | |||||||||| | ||||| || ||||||| ||||||||| ||||| |||||| |
|
|
| T |
47424696 |
tttgtacggcttatgaaaggcattgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggtacgtagattagatg |
47424609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 544 - 619
Target Start/End: Original strand, 8293575 - 8293651
Alignment:
| Q |
544 |
gaaactggtaaatcttatgtgtccatttatttt-tctcttctcttccgtgttaatttctctgattccagatattttg |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8293575 |
gaaactggtaaatcttatgtgtccatttattttttctcttctcttccgtgttaatttctctgattccagatattttg |
8293651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 458
Target Start/End: Original strand, 46796313 - 46796380
Alignment:
| Q |
391 |
gaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactatggacat |
458 |
Q |
| |
|
||||||||||||| | ||||||||||| | ||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
46796313 |
gaccattctcatattacttcttcagctcttcaagtgaagagtgagccgacctattcaattatggacat |
46796380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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