View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_30 (Length: 424)
Name: NF0412_low_30
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 1716488 - 1716830
Alignment:
| Q |
30 |
agtagaactattaagttttgaaataacataaattaaacagaca-gatattcaacttcatgtgggaaataaggagaacttatttttatctgctaatgtatt |
128 |
Q |
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| T |
1716488 |
agtagaactat-aagttttgaaataacctaaagtaaacagttaagagtttcaacttcatatggaaaataaggtgaacttatttttatctgctaatgtatt |
1716586 |
T |
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| Q |
129 |
gaaatagagtcgttttgatgagcatggaactcaagtcaaacgagtggaagatgtcaagggtatactaccagatctacatattttcattcatgaaattatc |
228 |
Q |
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| T |
1716587 |
gaaatagagtcgttttgatgagcatagaactcaagtcaaacgagcgtaagatgtcaagggtacactactagatctacatattgtcattcatgaaattatc |
1716686 |
T |
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| Q |
229 |
aatgactcatttctaaaataaagctccttttatttatttttgtatagttattattatagtttgccttacataaccaacatgattgcac--nnnnnnnnnn |
326 |
Q |
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| T |
1716687 |
attgactcatttctgaaataaagctccttttatttatttttgtatagttattattatagcttgccttacataaccaacatgattgcactttttatttttt |
1716786 |
T |
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| Q |
327 |
nnnnaaacatgagtgcacttgaaacttcaacgacattattttat |
370 |
Q |
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| T |
1716787 |
tttaaaacatgagtgcacttgaaacttcaacgacattattttat |
1716830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 420
Target Start/End: Original strand, 1738050 - 1738274
Alignment:
| Q |
192 |
actaccagatctacatattttcattcatgaaattatcaatgactcatttctaaaataaagctccttttatttatttttgtatagttattattatagtttg |
291 |
Q |
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| T |
1738050 |
actactagatctacatactgccattcatgaaattaccaatgactcatttctaaaagaaagctccttttatttatttttg------------tttagtttg |
1738137 |
T |
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| Q |
292 |
ccttacataaccaacatgattgcac--nnnnnnnnnnnnnnaaacatgagtgcacttgaaacttcaacgacattattttatt------gattgataacta |
383 |
Q |
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| T |
1738138 |
acttacataaccaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggcattattttagtgatggagattgataacta |
1738237 |
T |
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| Q |
384 |
tatatataaccacttcatttccccgcctttgctactc |
420 |
Q |
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| T |
1738238 |
tatatatatgcacttcttttccctgcctttgctactc |
1738274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 416
Target Start/End: Original strand, 1716828 - 1716860
Alignment:
| Q |
384 |
tatatataaccacttcatttccccgcctttgct |
416 |
Q |
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| T |
1716828 |
tatatataagcacttcatttccccgcctttgct |
1716860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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