View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_316 (Length: 209)
Name: NF0412_low_316
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_316 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 30941822 - 30941977
Alignment:
| Q |
1 |
tcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccac |
100 |
Q |
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| T |
30941822 |
tcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccac |
30941921 |
T |
|
| Q |
101 |
cagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttactta |
156 |
Q |
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| T |
30941922 |
cagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttactta |
30941977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 37974937 - 37974981
Alignment:
| Q |
37 |
tacgaatcacaaaagagaagagattggaacacttttggtcaatac |
81 |
Q |
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| T |
37974937 |
tacgagtcacaaaagagacgtgattggaacacttttggtcaatac |
37974981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 39556357 - 39556472
Alignment:
| Q |
25 |
acacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaata |
124 |
Q |
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|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||| || |||||| |
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| T |
39556357 |
acacttagccgctatgaatctcaaaagagaagagattggaacacttttggtcaatacttaaacaacctaagaccacccgttccactttctcactgcaatt |
39556456 |
T |
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| Q |
125 |
gcaaccatgttttgga |
140 |
Q |
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| T |
39556457 |
ccaaccatgtgttgga |
39556472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 32002397 - 32002342
Alignment:
| Q |
28 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatactt |
83 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
32002397 |
cttagtcgatacgagtcacaaaagagaagagattggaacacttttggacaatactt |
32002342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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