View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_320 (Length: 207)
Name: NF0412_low_320
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_320 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 38160947 - 38160849
Alignment:
| Q |
108 |
tcgagtgagatgaagtacgtatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcaattctttgatttcttcctgcca |
206 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38160947 |
tcgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcagttctttgatttcttcctgcca |
38160849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 38117120 - 38117023
Alignment:
| Q |
109 |
cgagtgagatgaagtacgtatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcaattctttgatttcttcctgcca |
206 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
38117120 |
cgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgcca |
38117023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 49004923 - 49004826
Alignment:
| Q |
109 |
cgagtgagatgaagtacgtatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcaattctttgatttcttcctgcca |
206 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||||| |
|
|
| T |
49004923 |
cgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgctcggagttctttgatttcttcctgcca |
49004826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 658 times since January 2019
Visitors: 3063