View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_322 (Length: 205)

Name: NF0412_low_322
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_322
NF0412_low_322
[»] chr2 (2 HSPs)
chr2 (1-123)||(23047189-23047311)
chr2 (1-123)||(44098391-44098513)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 23047189 - 23047311
Alignment:
Q  1 tttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctttcaacaaaacaacaacaagaccaacatcaataagaaccgaaattgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23047189 tttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctttcaacaaaacaacaacaagaccaacatcaataagaaccgaaattgttg 23047288  T
Q  101 ctctcatccttcaaactcttcat 123  Q
    |||||||||||||||||||||||    
T  23047289 ctctcatccttcaaactcttcat 23047311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 44098513 - 44098391
Alignment:
Q  1 tttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctttcaacaaaacaacaacaagaccaacatcaataagaaccgaaattgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44098513 tttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctttcaacaaaacaacaacaagaccaacatcaataagaaccgaaattgttg 44098414  T
Q  101 ctctcatccttcaaactcttcat 123  Q
    |||||||||||||||||||||||    
T  44098413 ctctcatccttcaaactcttcat 44098391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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