View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_328 (Length: 201)

Name: NF0412_low_328
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_328
NF0412_low_328
[»] scaffold0577 (2 HSPs)
scaffold0577 (21-82)||(7306-7367)
scaffold0577 (150-201)||(7435-7486)
[»] chr4 (8 HSPs)
chr4 (20-82)||(19608996-19609058)
chr4 (150-201)||(14747215-14747266)
chr4 (150-201)||(26013113-26013164)
chr4 (150-201)||(54604944-54604995)
chr4 (150-196)||(21102827-21102873)
chr4 (150-201)||(9923000-9923051)
chr4 (150-201)||(11480036-11480087)
chr4 (151-191)||(15008044-15008084)
[»] chr1 (3 HSPs)
chr1 (23-64)||(12359503-12359544)
chr1 (151-201)||(11809594-11809644)
chr1 (151-201)||(23072857-23072907)
[»] scaffold0022 (1 HSPs)
scaffold0022 (150-201)||(54342-54393)
[»] chr6 (9 HSPs)
chr6 (150-201)||(18913445-18913496)
chr6 (22-82)||(18319350-18319410)
chr6 (150-201)||(17378236-17378287)
chr6 (150-201)||(19399414-19399465)
chr6 (150-201)||(19953516-19953567)
chr6 (150-201)||(22420745-22420796)
chr6 (150-201)||(28104340-28104391)
chr6 (151-201)||(28104274-28104324)
chr6 (156-201)||(19953450-19953495)
[»] chr2 (5 HSPs)
chr2 (150-201)||(23707889-23707940)
chr2 (150-201)||(24917547-24917598)
chr2 (150-201)||(13101929-13101980)
chr2 (150-201)||(34492753-34492804)
chr2 (150-201)||(27472114-27472165)
[»] scaffold0230 (2 HSPs)
scaffold0230 (22-82)||(21059-21119)
scaffold0230 (22-82)||(23989-24049)
[»] scaffold0599 (1 HSPs)
scaffold0599 (150-201)||(6270-6321)
[»] chr8 (3 HSPs)
chr8 (150-201)||(19879359-19879410)
chr8 (150-201)||(23409391-23409442)
chr8 (150-191)||(26453821-26453862)
[»] chr3 (11 HSPs)
chr3 (150-201)||(11914553-11914604)
chr3 (150-201)||(14965798-14965849)
chr3 (150-201)||(24180543-24180594)
chr3 (150-201)||(17685938-17685989)
chr3 (150-201)||(17692161-17692212)
chr3 (150-201)||(24513475-24513526)
chr3 (150-201)||(35962261-35962312)
chr3 (150-201)||(52990145-52990196)
chr3 (151-201)||(13436002-13436052)
chr3 (151-201)||(34852978-34853028)
chr3 (156-196)||(13523420-13523460)
[»] chr7 (11 HSPs)
chr7 (156-201)||(14981842-14981887)
chr7 (150-201)||(1490643-1490694)
chr7 (150-201)||(8939829-8939880)
chr7 (150-201)||(14416604-14416655)
chr7 (151-201)||(14981941-14981991)
chr7 (151-201)||(15112695-15112745)
chr7 (150-196)||(37793836-37793882)
chr7 (156-201)||(14273105-14273150)
chr7 (156-201)||(29003784-29003829)
chr7 (150-190)||(11084766-11084806)
chr7 (153-201)||(13892198-13892245)
[»] scaffold1508 (1 HSPs)
scaffold1508 (150-201)||(41-92)
[»] scaffold0153 (1 HSPs)
scaffold0153 (150-201)||(10299-10350)
[»] scaffold0032 (1 HSPs)
scaffold0032 (150-201)||(66890-66941)
[»] scaffold0020 (1 HSPs)
scaffold0020 (150-201)||(170255-170306)
[»] chr5 (2 HSPs)
chr5 (150-201)||(35852439-35852490)
chr5 (154-201)||(41861972-41862019)
[»] scaffold0561 (1 HSPs)
scaffold0561 (151-201)||(10294-10344)
[»] scaffold0028 (2 HSPs)
scaffold0028 (151-201)||(63748-63798)
scaffold0028 (156-201)||(87748-87793)
[»] scaffold0004 (1 HSPs)
scaffold0004 (151-201)||(362464-362514)
[»] scaffold0436 (1 HSPs)
scaffold0436 (156-201)||(7728-7773)
[»] scaffold0434 (1 HSPs)
scaffold0434 (156-201)||(7348-7393)
[»] scaffold0462 (1 HSPs)
scaffold0462 (151-191)||(10203-10243)


Alignment Details
Target: scaffold0577 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 7306 - 7367
Alignment:
Q  21 acatcatcattaactaataatagtccttcatataaagtttcatcgacaactcaaggttaaat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7306 acatcatcattaactaataatagtccttcatataaagtttcatcaacaactcaaggttaaat 7367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 7435 - 7486
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  7435 tacgtgagagtacatcacctcttataatacgacaacataagaatacatcacc 7486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 19608996 - 19609058
Alignment:
Q  20 gacatcatcattaactaataatagtccttcatataaagtttcatcgacaactcaaggttaaat 82  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  19608996 gacatcatccttaactaataatagtccttcatataaagtttcattaacaactcaaggttaaat 19609058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 14747266 - 14747215
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  14747266 tacgtgagagtacaccacctcttataatacgacaacgtaagaatacaccacc 14747215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 26013113 - 26013164
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  26013113 tacgtgagagtacaccacctcttataatacgacaacgtaagaatacatcacc 26013164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 54604944 - 54604995
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  54604944 tacgtgagagtacaccacctcttataatacgacaacgtaagaatacaccacc 54604995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 21102873 - 21102827
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaataca 196  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  21102873 tacgtgagagtacaccacctcttataatacgacaacttaagaataca 21102827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 9923000 - 9923051
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  9923000 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 9923051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 11480087 - 11480036
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  11480087 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 11480036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 15008044 - 15008084
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataaga 191  Q
    |||| |||||||| |||||||||||| ||||||||||||||    
T  15008044 acgtaagagtacaccacctcttataaaacaacaacataaga 15008084  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 12359544 - 12359503
Alignment:
Q  23 atcatcattaactaataatagtccttcatataaagtttcatc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12359544 atcatcattaactaataatagtccttcatataaagtttcatc 12359503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 11809644 - 11809594
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| ||||    
T  11809644 acgtgagagtacaccacctcttataaaacaacaacgtaagagtacaccacc 11809594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 23072857 - 23072907
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||| ||||||||||||||||||||| |||||||| ||||| |||| ||||    
T  23072857 acgtaagagtacatcacctcttataaaacaacaacgtaagagtacaccacc 23072907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 54393 - 54342
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  54393 tacgtgagagtacaccacctcttataatacgacaacataagaatacaccacc 54342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 18913445 - 18913496
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  18913445 tacgtgagagtacaccacctcttataatacgacaacataagaatacaccacc 18913496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 18319350 - 18319410
Alignment:
Q  22 catcatcattaactaataatagtccttcatataaagtttcatcgacaactcaaggttaaat 82  Q
    |||||||||| |||||||||| ||||||||| || |||||||| ||||| |||||||||||    
T  18319350 catcatcattgactaataatattccttcatacaatgtttcatcaacaacccaaggttaaat 18319410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 17378287 - 17378236
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  17378287 tacgtgagagtacaccacctcttataatacgacaacgtaagaatacaccacc 17378236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 19399414 - 19399465
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  19399414 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 19399465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 19953567 - 19953516
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    ||||| |||||||| ||||||||||||||| ||||||||||| |||| ||||    
T  19953567 tacgtaagagtacaccacctcttataatacgacaacataagagtacaccacc 19953516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 22420745 - 22420796
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| |||||||| |||||| ||||||||||| |||| ||||    
T  22420745 tacgtgagagtacaccacctcttgtaatacgacaacataagagtacaccacc 22420796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 28104391 - 28104340
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  28104391 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 28104340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 28104324 - 28104274
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||| ||||||||||||||||||||  |||||||||||||| |||| ||||    
T  28104324 acgtaagagtacatcacctcttatagaacaacaacataagagtacaccacc 28104274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 19953495 - 19953450
Alignment:
Q  156 agagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||| ||||||||||||||| ||||||||||| |||| ||||    
T  19953495 agagtacaccacctcttataatacgacaacataagagtacaccacc 19953450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 23707940 - 23707889
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  23707940 tacgtgagagtacaccacctcttataatacaacaacgtaagaatacaccacc 23707889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 24917547 - 24917598
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  24917547 tacgtgagtgtacatcacctcttataatacgacaacgtaagaatacagcacc 24917598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 13101980 - 13101929
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  13101980 tacgtgagagtacaccacctcttataatacgacaacctaagaatacaccacc 13101929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 34492804 - 34492753
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  34492804 tacgtgagagtacaccacctcttataatacgacaacgtaagaatacaccacc 34492753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 27472114 - 27472165
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  27472114 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 27472165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 21119 - 21059
Alignment:
Q  22 catcatcattaactaataatagtccttcatataaagtttcatcgacaactcaaggttaaat 82  Q
    |||||||||| |||||||||| ||||||||| || |||||||| ||||| |||||||||||    
T  21119 catcatcattgactaataatattccttcatacaatgtttcatcaacaacccaaggttaaat 21059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 24049 - 23989
Alignment:
Q  22 catcatcattaactaataatagtccttcatataaagtttcatcgacaactcaaggttaaat 82  Q
    |||||||||  ||||||||||||| |||||| || |||||||| |||||||||||||||||    
T  24049 catcatcatcgactaataatagtcattcatacaatgtttcatcaacaactcaaggttaaat 23989  T

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Target: scaffold0599 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 6321 - 6270
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  6321 tacgtgagagtacaccacctcttataatacgacaacgtaagaatacaccacc 6270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 19879359 - 19879410
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  19879359 tacgtgagagtacaccacctcttataatacgacaacgtaagaatacaccacc 19879410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 23409391 - 23409442
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  23409391 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 23409442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 26453821 - 26453862
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataaga 191  Q
    |||||||||||||| |||||||||||| |||||||| |||||    
T  26453821 tacgtgagagtacaccacctcttataaaacaacaacgtaaga 26453862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 11914604 - 11914553
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  11914604 tacgtgagagtacaccacctcttataatacgacaacgtaagaatacaccacc 11914553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 14965798 - 14965849
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||||||||| ||||| |||| ||||    
T  14965798 tacgtgagagtacaccacctcttataatacaacaacgtaagagtacaccacc 14965849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 24180594 - 24180543
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  24180594 tacgtgagagtacaccacctcttataatacgacaacgtaagaatacaccacc 24180543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 17685989 - 17685938
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  17685989 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 17685938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 17692212 - 17692161
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  17692212 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 17692161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 24513475 - 24513526
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||| ||||||||| ||||| |||||||||| ||||    
T  24513475 tacgtgagagtacaccaccttttataatacgacaacgtaagaatacaccacc 24513526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 35962312 - 35962261
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||| ||| ||||| |||||||||| ||||    
T  35962312 tacgtgagagtacaccacctcttatagtacgacaacgtaagaatacaccacc 35962261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 52990196 - 52990145
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  52990196 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 52990145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 13436002 - 13436052
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| ||||    
T  13436002 acgtgagagtacaccacctcttataacacaacaacgtaagagtacaccacc 13436052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 34853028 - 34852978
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    ||||||||||||||||||||| ||||| ||||||| ||||| |||| ||||    
T  34853028 acgtgagagtacatcacctctcataattcaacaacgtaagagtacaccacc 34852978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 13523460 - 13523420
Alignment:
Q  156 agagtacatcacctcttataatacaacaacataagaataca 196  Q
    |||||||| |||||||||||| |||||||| ||||||||||    
T  13523460 agagtacaccacctcttataaaacaacaacgtaagaataca 13523420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 14981887 - 14981842
Alignment:
Q  156 agagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||||    
T  14981887 agagtacatcacctcttataaaacaacaacataagagtacaccacc 14981842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 1490694 - 1490643
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| |||||||||||| |||||||| ||||| |||| ||||    
T  1490694 tacgtgagagtacaccacctcttataaaacaacaacgtaagagtacaccacc 1490643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 8939829 - 8939880
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| |||||| |||||||| ||||| |||||||||| ||||    
T  8939829 tacgtgagagtacaccacctcgtataatacgacaacgtaagaatacaccacc 8939880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 14416655 - 14416604
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||| ||||    
T  14416655 tacgtaagagtacaccacctcttataatacaacaacgtaagagtacaccacc 14416604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 14981991 - 14981941
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    ||||||||||||| ||||||||||||||| ||||| || ||||||| ||||    
T  14981991 acgtgagagtacaccacctcttataatacgacaacgtaggaatacatcacc 14981941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 15112695 - 15112745
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||| ||||||||||||||||||||| |||||||| ||||| |||| ||||    
T  15112695 acgtaagagtacatcacctcttataaaacaacaacgtaagagtacaccacc 15112745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 37793882 - 37793836
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaataca 196  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| ||||    
T  37793882 tacgtgagagtacaccacctcttataatacgacaacgtaagagtaca 37793836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 14273105 - 14273150
Alignment:
Q  156 agagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    ||||||||||||||||||||| |||||||| ||||| |||| ||||    
T  14273105 agagtacatcacctcttataaaacaacaacgtaagagtacaccacc 14273150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 29003784 - 29003829
Alignment:
Q  156 agagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||| |||||||||||| |||||||||||||| |||| ||||    
T  29003784 agagtacaccacctcttataacacaacaacataagagtacaccacc 29003829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 11084766 - 11084806
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataag 190  Q
    |||||||||||||| ||||||||||||||| ||||| ||||    
T  11084766 tacgtgagagtacaccacctcttataatacgacaacgtaag 11084806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 13892198 - 13892245
Alignment:
Q  153 gtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    ||||||||||| |||||||||||| |||||||||||||| |||| ||||    
T  13892198 gtgagagtacaccacctcttataa-acaacaacataagagtacaccacc 13892245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1508 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1508
Description:

Target: scaffold1508; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 92 - 41
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||  ||||| |||||||||| ||||    
T  92 tacgtgagagtacaccacctcttataatatgacaacgtaagaatacaccacc 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 10299 - 10350
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  10299 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 10350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 66890 - 66941
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  66890 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 66941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 170306 - 170255
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  170306 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 170255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 35852439 - 35852490
Alignment:
Q  150 tacgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||    
T  35852439 tacgtgagagtacaccacctcttataatacgacaacgtaagagtacaccacc 35852490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 41862019 - 41861972
Alignment:
Q  154 tgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||| |||||||||||||| |||||| |||||||||| ||||    
T  41862019 tgagagtacaccacctcttataatataacaacgtaagaatacatcacc 41861972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 10294 - 10344
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||| |||||||||||||||||||||||| ||||| ||||| |||| ||||    
T  10294 acgtaagagtacatcacctcttataatacgacaacgtaagagtacaccacc 10344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 63748 - 63798
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||| |||||||||||||||||||||||| ||||| ||||| |||| ||||    
T  63748 acgtaagagtacatcacctcttataatacgacaacgtaagagtacaccacc 63798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 87748 - 87793
Alignment:
Q  156 agagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    ||||||||||||||||||||| || ||||||||||| |||| ||||    
T  87748 agagtacatcacctcttataaaacgacaacataagagtacaccacc 87793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 362464 - 362514
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||| ||||    
T  362464 acgtaagagtacaccacctcttataatacaacaacgtaagagtacaccacc 362514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0436 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 7728 - 7773
Alignment:
Q  156 agagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  7728 agagtacaccacctcttataatacgacaacgtaagaatacaccacc 7773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 7393 - 7348
Alignment:
Q  156 agagtacatcacctcttataatacaacaacataagaatacagcacc 201  Q
    |||||||||||||||||||||||| ||||| ||||| |||| ||||    
T  7393 agagtacatcacctcttataatacgacaacgtaagagtacaccacc 7348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 10203 - 10243
Alignment:
Q  151 acgtgagagtacatcacctcttataatacaacaacataaga 191  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  10203 acgtaagagtacatcacctcttataaaacaacaacgtaaga 10243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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