View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_33 (Length: 413)
Name: NF0412_low_33
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 35 - 405
Target Start/End: Complemental strand, 51846090 - 51845720
Alignment:
| Q |
35 |
agaaatgtcaatccacgtgcaattcctttcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcacctgtacaacaaacat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51846090 |
agaaatgtcaatccacgtgcaattcctttcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcacctgtacaacaaacat |
51845991 |
T |
|
| Q |
135 |
tacacatgaatgtgtataaatgactataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51845990 |
tacacatgaatgtgtataaatgactataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagc |
51845891 |
T |
|
| Q |
235 |
gttaccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaata |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51845890 |
gttaccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaata |
51845791 |
T |
|
| Q |
335 |
ttacggtttctaagcctcccaaaccgtctcatctcggcatcaaatatatctctgcttactttattcatctc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51845790 |
ttacggtttctaagcctcccaaaccgtctcatctcggcatcaaatatatctctgcttactttattcatctc |
51845720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 378
Target Start/End: Original strand, 18628238 - 18628379
Alignment:
| Q |
237 |
taccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatatt |
336 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | || ||||||||||| | ||| ||||| | || ||||| ||||||||||||| ||||||||| |
|
|
| T |
18628238 |
taccgtgcaagacatataacaagcttcctttaggcttatactcagtaacaaaaagcttttcctctcgacgataatgataagccaaaggagtcaaaatatt |
18628337 |
T |
|
| Q |
337 |
acggtttctaagcctcccaaaccgtctcatctcggcatcaaa |
378 |
Q |
| |
|
| | ||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
18628338 |
agcatgtctaatcctcccaaactgtctcatctcagcatcaaa |
18628379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 389 times since January 2019
Visitors: 3060