View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_34 (Length: 406)
Name: NF0412_low_34
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 46471445 - 46471726
Alignment:
| Q |
22 |
catcatcaagaaacataaatgtgatagggatatgcactcagaatacatatttccgcattaaccttattttatgttataggttgctgaaaatacagtatta |
121 |
Q |
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| T |
46471445 |
catcatcaagaaacataaatgtgatagggatatgcactcagaatacatatttccgcattaaccttattttatgttataggttgctgtaaatacagtatta |
46471544 |
T |
|
| Q |
122 |
caagatgagagggagattctaggccacataatcaagtctacaaatatgaagtgcctgactccaccgtgagttcctttaacttgcatacactttatgaatg |
221 |
Q |
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| T |
46471545 |
caagatgagagggagattc--------------aagtctacaaatatgaagtgcctgactccaccgtgagttcctttaacttgcatacactttatgaatg |
46471630 |
T |
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| Q |
222 |
gtattgtgtgtgtgcctgtgcttgagtatctaatgccaggattctgtctttttgaaggaaaaatgtttttcaatttaaaagcaggtctaaaaatga |
317 |
Q |
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| T |
46471631 |
gtattgtgtgtgtgcctgtgcttgagtatctaatgccaggattctgtctttttgaaggaaaaatgtttttcaatttaaaagcaggcctaaaaatga |
46471726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 87 - 228
Target Start/End: Original strand, 1475170 - 1475311
Alignment:
| Q |
87 |
attttatgttataggttgctgaaaatacagtattacaagatgagagggagattctaggccacataatcaagtctacaaatatgaagtgcctgactccacc |
186 |
Q |
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|||| |||||||||||||||| |||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1475170 |
atttcatgttataggttgctgtaaatacagtattgcaagacgagagggagtttctgggccacattatcaagtctacaaatatgaagtgcctgactccacc |
1475269 |
T |
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| Q |
187 |
gtgagttcctttaacttgcatacactttatgaatggtattgt |
228 |
Q |
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| T |
1475270 |
gtgagttcctttaacttgcataaactttatgactgttattgt |
1475311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 20743959 - 20743878
Alignment:
| Q |
137 |
attctaggccacataatcaagtctacaaatatgaagtgcctgactccaccgtgagttcctttaacttgcatacactttatga |
218 |
Q |
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| T |
20743959 |
attctgggccacattatcaagtctacaaatatgaagtgcctgaccccaccgtgagttcctttaacttgcataaactttatga |
20743878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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