View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_35 (Length: 405)
Name: NF0412_low_35
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 77 - 376
Target Start/End: Complemental strand, 5695153 - 5694854
Alignment:
| Q |
77 |
atgaattgaatataatccatcctcatgcatcaaagcatattatagtatatatctccatgtatccattcttttcttgaatgatgttttgaatagtgtcaca |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5695153 |
atgaattgaatataatccatcctcatgcatcaaagcatattatagtatatatctccatgtatccattcttttcttgaatgatgttttgaatagtgtcacg |
5695054 |
T |
|
| Q |
177 |
gctcaacacatgcggtgtggaactagttaaagtcagttttgacatgtgacatgtgttatccaatgcttttggattctagttatatgcatctcactaattt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5695053 |
gctcaacacatgcggtgtggaactagttaaagtcagttttgacatgtgacatgtgttatccaatgcttttggattctagttatatgcatctcactaattt |
5694954 |
T |
|
| Q |
277 |
aacttgtgttatcaaagagttaatatatgcattgtttaagtgaacttacattaaggtattatagtttatataatttttctgaaatgcattggcacaatat |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5694953 |
aacttgtgttatcaaagagttaatatatgcattgtttaagtgaacttacagtaaggtattatagtttatataatttttctgaaatgcattggcacaatat |
5694854 |
T |
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