View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_37 (Length: 402)

Name: NF0412_low_37
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_37
NF0412_low_37
[»] chr3 (2 HSPs)
chr3 (32-392)||(39427513-39427855)
chr3 (113-299)||(37462443-37462626)
[»] chr5 (2 HSPs)
chr5 (125-317)||(36224348-36224543)
chr5 (35-133)||(36225009-36225106)
[»] chr2 (21 HSPs)
chr2 (143-301)||(8579522-8579677)
chr2 (142-210)||(7611979-7612047)
chr2 (153-299)||(9061186-9061329)
chr2 (153-299)||(8573550-8573693)
chr2 (153-210)||(9364668-9364725)
chr2 (153-210)||(17566128-17566185)
chr2 (153-202)||(10347833-10347882)
chr2 (153-299)||(9065638-9065781)
chr2 (148-202)||(11987527-11987581)
chr2 (111-202)||(9291985-9292073)
chr2 (153-202)||(9321030-9321079)
chr2 (153-202)||(9328647-9328696)
chr2 (153-202)||(10335892-10335941)
chr2 (153-202)||(10353157-10353206)
chr2 (157-202)||(12018937-12018982)
chr2 (256-299)||(9274475-9274518)
chr2 (153-202)||(9284235-9284284)
chr2 (248-297)||(9291899-9291948)
chr2 (153-202)||(10371906-10371955)
chr2 (153-198)||(16269141-16269186)
chr2 (142-202)||(12006152-12006212)
[»] chr4 (2 HSPs)
chr4 (142-303)||(561172-561330)
chr4 (153-202)||(26574909-26574958)
[»] chr7 (3 HSPs)
chr7 (153-296)||(45243656-45243796)
chr7 (153-296)||(45237907-45238047)
chr7 (154-202)||(45230480-45230528)
[»] chr1 (4 HSPs)
chr1 (153-303)||(29443366-29443513)
chr1 (153-199)||(29453349-29453395)
chr1 (153-202)||(29423313-29423362)
chr1 (153-202)||(29467825-29467874)
[»] scaffold0667 (1 HSPs)
scaffold0667 (113-202)||(4519-4605)
[»] chr8 (1 HSPs)
chr8 (153-202)||(41966750-41966799)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 32 - 392
Target Start/End: Complemental strand, 39427855 - 39427513
Alignment:
Q  32 caagagattttcagtgaggttcctcttcctgatcttgaagaagctacaagcgagattaaatatgtttctattttggggaagtgtctttctatgactgtga 131  Q
    ||||||||||||| ||||||||||||||||||  |      |||||||||||||||||||||||||||  ||||||| |||||||||| ||| |||||||    
T  39427855 caagagattttcaatgaggttcctcttcctgaaat------agctacaagcgagattaaatatgtttcgcttttgggaaagtgtctttgtattactgtga 39427762  T
Q  132 gttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgttt 231  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||  ||||||||||    
T  39427761 gttgtaatggaactaataagtttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttacttttgtaggggaatggtgttt 39427662  T
Q  232 caattcacctttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagtagaatttaggggtgatttcatgagtgatctt 331  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |    
T  39427661 caattcacctttaatgtctttgaagcctttatgttattccagtgatagaagtaaagttctgttggaagtaaaatttaggggtgatttcaagagtgatcct 39427562  T
Q  332 aagaagaagcttaagaagaagctgttttggtatcatctcaaaagttataaagttacctatg 392  Q
    |||||||            |||||||||||||| |||||||||||||||||||||||||||    
T  39427561 aagaaga------------agctgttttggtattatctcaaaagttataaagttacctatg 39427513  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 299
Target Start/End: Complemental strand, 37462626 - 37462443
Alignment:
Q  113 tgtctttctatgactgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacat 212  Q
    ||||||| ||||||||||| || |||   ||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||| | | |||      
T  37462626 tgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttgtac-- 37462529  T
Q  213 ttgtaggtcaatggtgtttcaattcacctttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaag 299  Q
     ||| | | ||| |||||||| ||||||||| |  ||||||| ||||||||||||||| |||||| ||||||| ||| |||||||||    
T  37462528 -tgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctagtgatggaagtaaggttttgttggaag 37462443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 125 - 317
Target Start/End: Complemental strand, 36224543 - 36224348
Alignment:
Q  125 actgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaat 224  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||  |||    
T  36224543 actgtgagttgttatggaactaataaatttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttac-tttgtggg--aat 36224447  T
Q  225 ggtgtttcaattcacct------ttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagtagaatttaggggtgatt 317  Q
    ||| |||| ||||||||      || || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36224446 ggtatttcgattcaccttttaaattgatatctttgaagccttcatgttattccagtgatagaagtaaagttctgttggaagtagaattttggggtgatt 36224348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 36225106 - 36225009
Alignment:
Q  35 gagattttcagtgaggttcctcttcctgatcttgaagaagctacaagcgagattaaatatgtttctattttggggaagtgtctttctatgactgtgagt 133  Q
    |||||||||| |||||||||||||||| ||| ||||| || ||||||| ||||||||||||||||  |||||||  ||||||||| |||||||||||||    
T  36225106 gagattttcaatgaggttcctcttcctaatcctgaagtagttacaagcaagattaaatatgtttc-cttttgggatagtgtctttgtatgactgtgagt 36225009  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 143 - 301
Target Start/End: Original strand, 8579522 - 8579677
Alignment:
Q  143 actaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctt 242  Q
    |||| |||| |||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||| |||| |||  | | ||| ||||||  |||||    
T  8579522 actactaaggttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttttg-agg--attcgtgcttcaataaacctt 8579618  T
Q  243 taatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagta 301  Q
    | |  ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  8579619 tgagatctttgaagcctttgtgttattctagtgatagaagtaaagttctgttggaagta 8579677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 7612047 - 7611979
Alignment:
Q  142 aactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttac 210  Q
    ||||| |||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||    
T  7612047 aactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttac 7611979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 9061186 - 9061329
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 252  Q
    ||||||||||||| |||||||| ||||||| |||| |||||||||||||| | ||||| || ||   | ||| ||||||||||||||||||    | |||    
T  9061186 ttgatgtttgggtgatgaaagactatggatctagagatagttggtgtaaactttttactttggt---taaatcgtgtttcaattcacctttggacttttt 9061282  T
Q  253 gatgcctttatgttattccagtgatagaagtaaagttctgttggaag 299  Q
    || ||| ||||||||||| |||||| || |||| |||||||||||||    
T  9061283 gaggccgttatgttattctagtgatggaggtaaggttctgttggaag 9061329  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 8573550 - 8573693
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 252  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||||||| | ||||| || ||   | ||| |||||||| | ||| ||| |  ||||     
T  8573550 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactttcgt---taaatcgtgtttcactccacattttaaatcttc 8573646  T
Q  253 gatgcctttatgttattccagtgatagaagtaaagttctgttggaag 299  Q
    || ||||||| ||||||| |||||| ||||||| |||||||||||||    
T  8573647 gaggcctttaggttattctagtgatggaagtaaggttctgttggaag 8573693  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 9364725 - 9364668
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttac 210  Q
    ||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||    
T  9364725 ttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttac 9364668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 17566128 - 17566185
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttac 210  Q
    ||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||    
T  17566128 ttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttac 17566185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 10347882 - 10347833
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  10347882 ttgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaa 10347833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 9065638 - 9065781
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtc-aatggtgtttcaattcacctttaatgtctt 251  Q
    |||||| |||||| |||||||||||||||| |||| |||||||||||||| | ||||| ||    |||| |||  |||||| |||||| ||| |   |||    
T  9065638 ttgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttacttt----ggtcaaatcttgtttccattcacatttgacagctt 9065733  T
Q  252 tgatgcctttatgttattccagtgatagaagtaaagttctgttggaag 299  Q
     || |||| || |||||||| ||||| ||||||| |||||||||||||    
T  9065734 cgaggcctctaggttattccggtgatggaagtaaggttctgttggaag 9065781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 11987527 - 11987581
Alignment:
Q  148 taagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    |||| ||||| ||||||| |||||||||||||||| |||| ||||||||||||||    
T  11987527 taagattgatatttgggtgatgaaagaatatggatgtagagatagttggtgtaaa 11987581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 9292073 - 9291985
Alignment:
Q  111 agtgtctttctatgactgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||| ||||||||||| ||   ||| ||||| |||  ||||||||||||| |||||| ||||||| | |||| ||||||||||||||    
T  9292073 agtgtctttgtatgactgtgaatt---atgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagatagttggtgtaaa 9291985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 9321079 - 9321030
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||    
T  9321079 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 9321030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 9328696 - 9328647
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||||||| |||||| ||||||||| |||| ||||||||||||||    
T  9328696 ttgatgtttgggtgatgaaacaatatggatatagagatagttggtgtaaa 9328647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 10335941 - 10335892
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||    
T  10335941 ttgatgtttgggtgatgaaagaatatggctgtagagatagttggtgtaaa 10335892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 10353206 - 10353157
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||||||| |||||||||||||||| |||| | ||||||||||||    
T  10353206 ttgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaa 10353157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 12018937 - 12018982
Alignment:
Q  157 tgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||    
T  12018937 tgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaa 12018982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 9274518 - 9274475
Alignment:
Q  256 gcctttatgttattccagtgatagaagtaaagttctgttggaag 299  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||    
T  9274518 gcctttatgttattctagtgatggaagtaaggttctgttggaag 9274475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 9284235 - 9284284
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    |||| |||||||| |||||||||||||| | |||| ||||||||||||||    
T  9284235 ttgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 9284284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 9291948 - 9291899
Alignment:
Q  248 tctttgatgcctttatgttattccagtgatagaagtaaagttctgttgga 297  Q
    ||||||| ||||||||||||||| || ||| ||||||| |||||||||||    
T  9291948 tctttgaggcctttatgttattctagggatggaagtaaggttctgttgga 9291899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 10371955 - 10371906
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||| ||||||| |||||||||||||| | |||| ||||||||||||||    
T  10371955 ttgatatttgggtgatgaaagaatatggttctagagatagttggtgtaaa 10371906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 16269186 - 16269141
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtg 198  Q
    ||||||||||||| |||||||| ||||||| |||| ||||||||||    
T  16269186 ttgatgtttgggtgatgaaagagtatggatatagagatagttggtg 16269141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 12006152 - 12006212
Alignment:
Q  142 aactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||| |||| ||||||| ||||| |||||||||||||| | || | ||||||||||||||    
T  12006152 aactactaagattgatgtatgggtgatgaaagaatatggttgtaaagatagttggtgtaaa 12006212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 303
Target Start/End: Complemental strand, 561330 - 561172
Alignment:
Q  142 aactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacct 241  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| |||| |||  ||  || ||||| |  ||||    
T  561330 aactactaaggttgatgtttgggtaatgaaagaatatggatttagagatagttggtgtgtattgtttac-tttggagg--aagtgtttttcagtagacct 561234  T
Q  242 ttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagtaga 303  Q
    || |   | | || ||||||| |||||||  |||||||||||||||||||||||||||||||    
T  561233 tttacaccatggaagcctttaggttattctggtgatagaagtaaagttctgttggaagtaga 561172  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 26574958 - 26574909
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  26574958 ttgatgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaa 26574909  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 45243796 - 45243656
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 252  Q
    ||||||||||||| |||||||||||||| | |||| ||| |||||||||| | ||||| || ||   | ||| |||||||||||  | |||    |||||    
T  45243796 ttgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactttttactttggt---taaatcgtgtttcaattttcatttggaatcttt 45243700  T
Q  253 gatgcctttatgttattccagtgatagaagtaaagttctgttgg 296  Q
    || ||||||||||||||| |||||| ||||||||||||||||||    
T  45243699 gaggcctttatgttattcgagtgatcgaagtaaagttctgttgg 45243656  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 45238047 - 45237907
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 252  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||||||| | |||||   | ||| | ||| |||||||||||  | | | |  |  ||    
T  45238047 ttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttac---tttagttgaatcgtgtttcaattttcatctgaaattgtt 45237951  T
Q  253 gatgcctttatgttattccagtgatagaagtaaagttctgttgg 296  Q
    || ||||||||||||||| || ||| ||||||||||||||||||    
T  45237950 gaggcctttatgttattcaagcgatcgaagtaaagttctgttgg 45237907  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 45230528 - 45230480
Alignment:
Q  154 tgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    |||||||||||| |||||||||||||| | |||| ||||||||||||||    
T  45230528 tgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 45230480  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 303
Target Start/End: Original strand, 29443366 - 29443513
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 252  Q
    ||||||||||||| |||||||||||||||| |||| |||| ||||||||| | ||||| ||||  | | ||| |||||||| || |||||| |   ||||    
T  29443366 ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttac-tttg--gctgaatcgtgtttcagtttacctttgagagcttt 29443462  T
Q  253 gatgcctttatgttattccagtgatagaagtaaagttctgttggaagtaga 303  Q
    || |  |||| ||||||| || ||||||||||  ||||||||| |||||||    
T  29443463 gaggattttaggttattcgagcgatagaagtatggttctgttgcaagtaga 29443513  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 29453349 - 29453395
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgt 199  Q
    ||||||||||||| |||||||||||||||| |||| |||| ||||||    
T  29453349 ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgt 29453395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 29423362 - 29423313
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||||| | |||||||||||||||| |||| |||| |||||||||    
T  29423362 ttgatgtttggctgatgaaagaatatggatgtagagatagctggtgtaaa 29423313  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 29467825 - 29467874
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||||| | |||||||||||||||| |||| |||||||| |||||    
T  29467825 ttgatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaa 29467874  T

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Target: scaffold0667 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 4605 - 4519
Alignment:
Q  113 tgtctttctatgactgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||| ||||||||||| ||   ||| ||||| |||  ||||||||||||| |||||| |||||||||| | | ||||||||||||||    
T  4605 tgtctttgtatgactgtgaatt---atgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaaagatagttggtgtaaa 4519  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 41966750 - 41966799
Alignment:
Q  153 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 202  Q
    ||||||||||||| |||||||||||| ||| |||| |||| |||||||||    
T  41966750 ttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaa 41966799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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