View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_38 (Length: 402)
Name: NF0412_low_38
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 29 - 392
Target Start/End: Original strand, 26689455 - 26689833
Alignment:
| Q |
29 |
aaaattaaatattctccaccaacttgtttgcctttctataaattccctactcaaatcacatagactcctcttccactttctcatttttcctatcaaatct |
128 |
Q |
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| T |
26689455 |
aaaattaaatattctccaccaacttgtttgcctttctataaattccctactcaaatcacatagactcctcttccactttctcatttttcctatcatatct |
26689554 |
T |
|
| Q |
129 |
ctcaaactttctaa-----------gatattttatttatatatcatatgctccatcattactcttgtgttcattaacaaaacttctctttcatttcttcc |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26689555 |
ctcaaactttctaaatagccactaagatattttatttatatatcatatgctccatcattactcttgtgttcattaacaaaacttctctttcatttcttcc |
26689654 |
T |
|
| Q |
218 |
tcctctcataaaaaattcaccttagaaattgcatatta----attaattaaatgtccaacatcttattgttattgtttgatactcatgtatccaattctc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26689655 |
tcctctcataaaaaattcaccttagaaattgcatattaattaattaattaaatgtccaacatcttattgttattgtttgatactcatgtatccaattctc |
26689754 |
T |
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| Q |
314 |
agtgaaattttcttttctggggggtgtatgatcaattccactgttaggcgcaggacccatttagttcaatctttctctg |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26689755 |
agtgaaattttcttttctggggggtgtatgatcaattccactgttaggcgcaggacccatttagttcaatctttctctg |
26689833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 287 - 392
Target Start/End: Original strand, 54790904 - 54791006
Alignment:
| Q |
287 |
tgtttgatactcatgtatccaattctcagtgaaattttcttttctggggggtgtatgatcaattccactgttaggcgcaggacccatttagttcaatctt |
386 |
Q |
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||||||| | ||||||||| |||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54790904 |
tgtttgagattcatgtatcaaattctgagtgaaatcttcttttctggt---tgtatgatcaattctactgttaggcgcaggacccatttagttcaatctt |
54791000 |
T |
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| Q |
387 |
tctctg |
392 |
Q |
| |
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|||||| |
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|
| T |
54791001 |
tctctg |
54791006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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