View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_39 (Length: 400)
Name: NF0412_low_39
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 59 - 390
Target Start/End: Original strand, 5476065 - 5476391
Alignment:
| Q |
59 |
atccattcgtcaaaagctcataatcacaaatttgaaaccatctaatatcctctggtggggtgggacgatggaaagcacaaaaatcatcattggacatatt |
158 |
Q |
| |
|
|||||||| |||||||||||| | |||||| |||||| || ||||||||||||||| || |||| |||||||||||||||||||||||||||| |
|
|
| T |
5476065 |
atccattcatcaaaagctcattctggtaaatttaaaaccaactgatatcctctggtgggatg-----atggcaagcacaaaaatcatcattggacatatt |
5476159 |
T |
|
| Q |
159 |
gttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactcctta |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5476160 |
gttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactcctta |
5476259 |
T |
|
| Q |
259 |
acatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactgg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5476260 |
acatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactgg |
5476359 |
T |
|
| Q |
359 |
tcatgttctaaagtttgagctcaatacctatg |
390 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
5476360 |
tcatattctaaagtttgagctcaatacctatg |
5476391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 29 - 359
Target Start/End: Original strand, 5481122 - 5481447
Alignment:
| Q |
29 |
aaaatctacttgccattttgttctatgtatatccattcgtcaaaagctcataatcacaaatttgaaaccatctaatatcctctggtggggtgggacgatg |
128 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||||| || ||| |
|
|
| T |
5481122 |
aaaagctacttgccatcttgttctatgtatatccattcatcaaaagctcgtaatcaccaatttgaaaccatctgatatcctctggtgggatg-----atg |
5481216 |
T |
|
| Q |
129 |
gaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactcttt |
228 |
Q |
| |
|
| ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5481217 |
gcaagcacaaaaatcatcagtgtacatattgttattcctctcttcttcctttttgcatcaactcaatgtgaagttaaaagccttaatgttagcactcttt |
5481316 |
T |
|
| Q |
229 |
gcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattg |
328 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| ||| ||||||| ||| || |
|
|
| T |
5481317 |
gcattaaggaagagagaatggcactccttaacgtcaaaaaagatctcaatgatccttacaattgcctttcttcatgggttgggaaagattgttgtcgctg |
5481416 |
T |
|
| Q |
329 |
gaagggtattgaatgtgacaaccaaactggt |
359 |
Q |
| |
|
|| ||||| ||||||||| | ||||||||| |
|
|
| T |
5481417 |
gattggtatagaatgtgactatcaaactggt |
5481447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 207 - 382
Target Start/End: Original strand, 5484144 - 5484319
Alignment:
| Q |
207 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatggg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||| | |
|
|
| T |
5484144 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaatagatctcaaagatccatccaattgcctttcttcatgag |
5484243 |
T |
|
| Q |
307 |
tcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaa |
382 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484244 |
ttggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaa |
5484319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 207 - 380
Target Start/End: Original strand, 5489329 - 5489502
Alignment:
| Q |
207 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatggg |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
5489329 |
agccttaatgttagtactctttgcattaaggaagagagagtggcactccttaaaatcaaaaaagatctcaaggatccttcaaattgcctttcttcatggg |
5489428 |
T |
|
| Q |
307 |
tcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctc |
380 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5489429 |
ttggggaagattgttgtaattggaagggtatagaatgtgacaaccaaactggtcatgttcaaaagtttgagctc |
5489502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 157 - 381
Target Start/End: Original strand, 5495061 - 5495285
Alignment:
| Q |
157 |
ttgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactcct |
256 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||| |||| || ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5495061 |
ttgtcatttccctcttctttctttttgcatcaacccaatatgtagtgagtagcaataatgttagcactctttgcattaaggaagagagagtggcactcct |
5495160 |
T |
|
| Q |
257 |
taacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaact |
356 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
5495161 |
taaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatgggtcggggaagattgctgtaattggaagggtatacaatgtaacaaccaaact |
5495260 |
T |
|
| Q |
357 |
ggtcatgttctaaagtttgagctca |
381 |
Q |
| |
|
||||||||| ||||| || |||||| |
|
|
| T |
5495261 |
ggtcatgttttaaagcttaagctca |
5495285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 125 - 349
Target Start/End: Original strand, 5466460 - 5466684
Alignment:
| Q |
125 |
gatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcact |
224 |
Q |
| |
|
||||| |||||||| |||| || ||||| || ||||||| ||||| |||| ||||||||||||||||| |||| ||||| ||||||| ||||||||||| |
|
|
| T |
5466460 |
gatggcaagcacaagaatcgtctttggatattatgttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcact |
5466559 |
T |
|
| Q |
225 |
ctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgta |
324 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||| || ||||| ||| | ||||||||| |
|
|
| T |
5466560 |
ctttgcattaaagaagagagggtggcactccttaacataaaaaaagatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtg |
5466659 |
T |
|
| Q |
325 |
attggaagggtattgaatgtgacaa |
349 |
Q |
| |
|
| |||| ||||| |||||||||| |
|
|
| T |
5466660 |
actggattggtatacaatgtgacaa |
5466684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 469 times since January 2019
Visitors: 3060