View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_40 (Length: 399)
Name: NF0412_low_40
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 396
Target Start/End: Complemental strand, 25223046 - 25222665
Alignment:
| Q |
30 |
tgtgactattaaatacnnnnnnncaaacacagttaaaaatatattaaccaaaatgaacatttgaatgatgaagtaatgtaattacggcaaaataaacgat |
129 |
Q |
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|||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |
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| T |
25223046 |
tgtgactattaaatacaaaaaaacaaaaacaattaaaaatatattaaccaaaatgaacatttgaatgataaagtaatgtaattgcggaaaaataaacgat |
25222947 |
T |
|
| Q |
130 |
gaaaaa----------------cacaatgagttataaatatattaaccaacctaaacattatacttacatcaacataattctaaatcatgtaagctacat |
213 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25222946 |
gaaaaatttaataacaataaaacacaatgagttataaatatattaaccaacctaaacattatacttacatcaacataattctaaatcatgtaagcaacat |
25222847 |
T |
|
| Q |
214 |
gattagcgaatggtggcaatagagatagataatcaggtcccctgataaaggcatcaagtgatggtgggggtgtggtgcatgatgccgctcaggctgaacc |
313 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
25222846 |
gat-agcgaatggtggcaatagagatagataatcaggtcccctgataaaggcatcaagtggtggtgggggtgtggtgcatgatgccactcaggctgaacc |
25222748 |
T |
|
| Q |
314 |
tcctcgtgatgctgctcagcctggtggtattcctcctagataggggcatggtagtgcaccttagtgagatcctatgctactcc |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |
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| T |
25222747 |
tcctcgtgatgctgctcagcctggtggtattcctcctagataggggcatggtagtgcgccttagtgagatcctgtactactcc |
25222665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 7082924 - 7082881
Alignment:
| Q |
63 |
taaaaatatattaaccaaaatgaacatttgaatgatgaagtaat |
106 |
Q |
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|
| T |
7082924 |
taaaaatatattaaccaaaataaacatttgaatgataaagtaat |
7082881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 131 - 349
Target Start/End: Original strand, 8351415 - 8351633
Alignment:
| Q |
131 |
aaaaacacaatgagttataaatatattaaccaacctaaacattatacttacatcaacataattctaaatcatgtaagctacatgattagcgaatggtggc |
230 |
Q |
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||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |
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| T |
8351415 |
aaaaacataatgagttagaaatatattaaccaaattaaacattatacttacatcaacataattctaaatcatgtaagcaacatgattagagaatggcggc |
8351514 |
T |
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| Q |
231 |
aatagagatagataatcaggtcccctgataaaggcatcaagtgatggtgggggtgtggtgcatgatgccgctcaggctgaacctcctcgtgatgctgctc |
330 |
Q |
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|||||||| || |||| ||||||| |||| |||||| || |||||||| || | ||| | || |||||||||||||||||||||||||||| ||| |
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| T |
8351515 |
aatagagacctatcatcatgtcccctagtaaaagcatcagttggtggtggggctgcgatgcgtcgtgtcgctcaggctgaacctcctcgtgatgcttctc |
8351614 |
T |
|
| Q |
331 |
agcctggtggtattcctcc |
349 |
Q |
| |
|
|||||||| ||| |||||| |
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| T |
8351615 |
agcctggttgtactcctcc |
8351633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 8351328 - 8351394
Alignment:
| Q |
60 |
agttaaaaatatattaaccaaaatgaacatttgaatgatgaagtaatgtaattacggcaaaataaac |
126 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| ||||||| |||||| || ||||||||| |
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| T |
8351328 |
agttgaaaatatattaacgaaaatgaacatttgaatgataaagtaatataattagggaaaaataaac |
8351394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 40409293 - 40409245
Alignment:
| Q |
65 |
aaaatatattaaccaaaatgaacatttgaatgatgaagtaatgtaatta |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| |||||| |
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|
| T |
40409293 |
aaaatatattaaccaaaataaacatttgaatgataaagtaatataatta |
40409245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 34349804 - 34349851
Alignment:
| Q |
175 |
tacttacatcaacataattctaaatcatgtaagctacatgattagcga |
222 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||| ||||||||||||| |
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|
| T |
34349804 |
tacttacatcaacgtcattccaaatcatgtaagcaacatgattagcga |
34349851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 16781940 - 16781894
Alignment:
| Q |
61 |
gttaaaaatatattaaccaaaatgaacatttgaatgatgaagtaatg |
107 |
Q |
| |
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||||||||||||||||| ||||| |||||||||| ||| |||||||| |
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| T |
16781940 |
gttaaaaatatattaacaaaaataaacatttgaacgataaagtaatg |
16781894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 13814714 - 13814770
Alignment:
| Q |
171 |
attatacttacatcaacataattctaaatcatgtaagctacatgattagcgaatggt |
227 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| | |||||||||| ||||||| |
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|
| T |
13814714 |
attatacttacttcaacataatttcaaatcttgtaaacaacatgattagtgaatggt |
13814770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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