View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_41 (Length: 398)

Name: NF0412_low_41
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_41
NF0412_low_41
[»] chr4 (4 HSPs)
chr4 (76-370)||(49380251-49380546)
chr4 (76-175)||(49381403-49381502)
chr4 (128-176)||(33806636-33806683)
chr4 (109-149)||(19872470-19872510)
[»] chr2 (2 HSPs)
chr2 (76-151)||(30558196-30558271)
chr2 (100-152)||(30381270-30381322)
[»] chr8 (2 HSPs)
chr8 (92-173)||(45357126-45357207)
chr8 (76-175)||(5970854-5970952)
[»] chr5 (1 HSPs)
chr5 (94-176)||(29834301-29834383)
[»] chr1 (3 HSPs)
chr1 (125-173)||(12632195-12632243)
chr1 (125-174)||(19623032-19623081)
chr1 (125-173)||(45427051-45427099)
[»] chr3 (2 HSPs)
chr3 (122-157)||(28202528-28202563)
chr3 (110-151)||(50239140-50239181)
[»] chr7 (2 HSPs)
chr7 (109-174)||(27298141-27298206)
chr7 (125-174)||(32055433-32055482)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 76 - 370
Target Start/End: Complemental strand, 49380546 - 49380251
Alignment:
Q  76 gttgattttgaaactaaggggatcaaaatgcttattttaaaaaataagatatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaagc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49380546 gttgattttgaaactaaggggatcaaaatgcttattttaaaaaataagatatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaagc 49380447  T
Q  176 taacttgttttagacccacataactttgtcaacaatggaagtgaaaagtattcaaaggagacagatgacacacgtattcaactcatttatttattaatac 275  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49380446 taacttgttttagacccgcataactttgtcaacaatggaagtgaaaagtattcaaaggagacagatgacacacgtattcaactcatttatttattaatac 49380347  T
Q  276 taataactaactaatcacactttgtgtttctaaagaaagaatccatgtagtcttgaatctaag-ccccttgactcctccactaagaggcagaaagt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49380346 taataactaactaatcacactttgtgtttctaaagaaagaatccatgtagtcttgaatctaagcccccttgactcctccactaagaggcagaaagt 49380251  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 49381403 - 49381502
Alignment:
Q  76 gttgattttgaaactaaggggatcaaaatgcttattttaaaaaataagatatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaagc 175  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||    |||||||||||||||||||||||||||  ||||| ||||| ||||||||||    
T  49381403 gttgattttgaaactagggggatcaaaatgctgattttaaaaaatggagtatcaaaagttaacaattttaaaaataaggagatcaaaattgcatttaagc 49381502  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 33806683 - 33806636
Alignment:
Q  128 caaaagttaacaattttaaaaatagagagatgaaaatagcatttaagct 176  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  33806683 caaaagttaacaattttaaaaatagag-gatcaaaattgcatttaagct 33806636  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 19872470 - 19872510
Alignment:
Q  109 attttaaaaaataagatatcaaaagttaacaattttaaaaa 149  Q
    ||||||||||||| ||||||||||||||||||  |||||||    
T  19872470 attttaaaaaataggatatcaaaagttaacaaacttaaaaa 19872510  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 30558271 - 30558196
Alignment:
Q  76 gttgattttgaaactaaggggatcaaaatgcttattttaaaaaataagatatcaaaagttaacaattttaaaaata 151  Q
    ||||| |||||||||| |||||||||||||||  ||| ||||||| ||||||||||||||||||||||| ||||||    
T  30558271 gttgactttgaaactagggggatcaaaatgctggtttgaaaaaatgagatatcaaaagttaacaattttgaaaata 30558196  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 30381270 - 30381322
Alignment:
Q  100 aaaatgcttattttaaaaaataagatatcaaaagttaacaattttaaaaatag 152  Q
    ||||||||  ||||| |||||  ||||||||||||||||||||||||||||||    
T  30381270 aaaatgctagttttagaaaatgggatatcaaaagttaacaattttaaaaatag 30381322  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 45357126 - 45357207
Alignment:
Q  92 aggggatcaaaatgcttattttaaaaaataagatatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaa 173  Q
    ||||||||||||||||  |||||||||||  ||||||||||||||||||||||||||||||   ||| ||||| ||||||||    
T  45357126 aggggatcaaaatgctagttttaaaaaatgggatatcaaaagttaacaattttaaaaataggaggatcaaaattgcatttaa 45357207  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 5970952 - 5970854
Alignment:
Q  76 gttgattttgaaactaaggggatcaaaatgcttattttaaaaaataagatatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaagc 175  Q
    ||||| |||||||||| |||||||||||| ||  ||||  |||||  |||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  5970952 gttgactttgaaacta-ggggatcaaaatactagttttggaaaatgggatatcaaaaattaacaattttaaaaatagggggatcaaaattgcatttaagc 5970854  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 29834301 - 29834383
Alignment:
Q  94 gggatcaaaatgcttattttaaaaaataagatatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaagct 176  Q
    |||||||||| | | |||||||||||||  |||| |||||||||||| ||||||||||  | ||| ||||| |||||||||||    
T  29834301 gggatcaaaacgttgattttaaaaaatagaatataaaaagttaacaaatttaaaaataaggggatcaaaattgcatttaagct 29834383  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 12632195 - 12632243
Alignment:
Q  125 tatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaa 173  Q
    |||||||||||||||||||| ||||||| ||||| ||||| ||||||||    
T  12632195 tatcaaaagttaacaattttgaaaatagggagatcaaaattgcatttaa 12632243  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 19623081 - 19623032
Alignment:
Q  125 tatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaag 174  Q
    |||||||| ||||||||||| ||||||| ||||| ||||| |||||||||    
T  19623081 tatcaaaacttaacaattttgaaaatagggagatcaaaattgcatttaag 19623032  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 45427099 - 45427051
Alignment:
Q  125 tatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaa 173  Q
    |||||||||||||||||||| ||||||| | ||| ||||| ||||||||    
T  45427099 tatcaaaagttaacaattttgaaaatagggggatcaaaattgcatttaa 45427051  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 28202528 - 28202563
Alignment:
Q  122 agatatcaaaagttaacaattttaaaaatagagaga 157  Q
    ||||||||||||||||||||||||||||||| ||||    
T  28202528 agatatcaaaagttaacaattttaaaaatagggaga 28202563  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 50239181 - 50239140
Alignment:
Q  110 ttttaaaaaataagatatcaaaagttaacaattttaaaaata 151  Q
    |||||||||||| |||||||||||||||||| ||| ||||||    
T  50239181 ttttaaaaaataggatatcaaaagttaacaaatttgaaaata 50239140  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 27298206 - 27298141
Alignment:
Q  109 attttaaaaaataagatatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaag 174  Q
    ||||||||||||  | |||||||||||||||| || |||||||| || || ||||| |||||||||    
T  27298206 attttaaaaaatggggtatcaaaagttaacaaattaaaaaatagggaaattaaaattgcatttaag 27298141  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 32055433 - 32055482
Alignment:
Q  125 tatcaaaagttaacaattttaaaaatagagagatgaaaatagcatttaag 174  Q
    |||||||||||||||||||  ||||||||| ||| ||||| |||||||||    
T  32055433 tatcaaaagttaacaatttcgaaaatagagggattaaaattgcatttaag 32055482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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