View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_44 (Length: 396)
Name: NF0412_low_44
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 143 - 379
Target Start/End: Original strand, 52492697 - 52492932
Alignment:
| Q |
143 |
tatatatgatgattgatgaaaacggttctctcgattgttgctgttgaggaaccttaaagccattacaaactcttgctgagttgaattgcatgtatattaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52492697 |
tatatatgatgattgatgaaaacggttctctcgattgttgttgttgaggaaccttaaagccattacaaactcttgctgagttgaattgcatgtatattaa |
52492796 |
T |
|
| Q |
243 |
gnnnnnnnngtaatggtgattgtgagttgagcaagacaagcaaaaatgaactttcttggatttagtggnnnnnnntcannnnnnnnaaacaaaaatttca |
342 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
52492797 |
gaaaaaaaagtaatggtgattgtgagttgagcaagacaagcaaaaatgaactttcttggatttagt-gcaaaaaatcaattttttttaacaaaaatttca |
52492895 |
T |
|
| Q |
343 |
gtctttgaacactagagaaatggatacgaaggtgctt |
379 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
52492896 |
gtctttgaacaccagagaaatggatacgaaggtgctt |
52492932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 143 - 379
Target Start/End: Original strand, 52749308 - 52749542
Alignment:
| Q |
143 |
tatatatgatgattgatgaaaacggttctctcgattgttgctgttgaggaaccttaaagccattacaaactcttgctgagttgaattgcatgtatattaa |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52749308 |
tatatatgatgattgatgaaaacggttctctcgattgttgctgttgaggaatcttaaagccattacaaactcttgctcagttgaattgcatgtatattaa |
52749407 |
T |
|
| Q |
243 |
gnnnnnnnngtaatggtgattgtgagttgagcaagacaagcaaaaatgaactttcttggatttagtggnnnnnnntcannnnnnnnaaacaaaaatttca |
342 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
52749408 |
gaaaaaaa--taatggtgattgtgagttgagcaagacaagcaaaaatgaactttcttggatttagtggaaaaaaatcaattttttttaacaaaaatttca |
52749505 |
T |
|
| Q |
343 |
gtctttgaacactagagaaatggatacgaaggtgctt |
379 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
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|
| T |
52749506 |
gtctttgaacaccagagaaatggatacgaaggtgctt |
52749542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 52749199 - 52749239
Alignment:
| Q |
30 |
gaccacaaagttctaatattagaacaaacaattagaattca |
70 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52749199 |
gaccacaaagttctaatattagaacaaaccattagaattca |
52749239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 52492587 - 52492626
Alignment:
| Q |
31 |
accacaaagttctaatattagaacaaacaattagaattca |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
52492587 |
accacaaagttctaatattagaacaaacaataagaattca |
52492626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 51377904 - 51377998
Alignment:
| Q |
143 |
tatatatgatgattgatgaaaacggttct-ctcgattgttgctgttgaggaaccttaaagccattacaaactcttgctgagttgaattgcatgta |
236 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51377904 |
tatatatgatgattgatgaaaacggtttttctcgattgttgctgttgaggaaccttaaagccattacaaactcttgctgagttgaattgcatgta |
51377998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 51377793 - 51377833
Alignment:
| Q |
30 |
gaccacaaagttctaatattagaacaaacaattagaattca |
70 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
51377793 |
gaccacaacgttctaatattagaacaaacaattagaattca |
51377833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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