View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_47 (Length: 393)
Name: NF0412_low_47
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_47 |
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| [»] scaffold0166 (1 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 19581 - 19900
Alignment:
| Q |
13 |
taggcaaaggagcgtgcagtggaagccaactcggcatgccaatcaaacggcatggccgtggctaggttaaatatgaactagaagtgaagtctgttgggat |
112 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19581 |
taggcaaaggagggtgcagtggaaaccaactcggcatgccaatcaaacggcatggccgtggctaggttaaatatgaactagaagtgaagtctgttgggat |
19680 |
T |
|
| Q |
113 |
ggaagaagaaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19681 |
ggaagaagaaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctct |
19780 |
T |
|
| Q |
213 |
agcactcacaatgaaattgaaagaacatgtgatgaatatgtgagtggagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19781 |
agcactcacaatgaaattgaaagaacatgtgatgaatatgtgagtagagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttag |
19880 |
T |
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| Q |
313 |
gggctgcgctcatgctaggt |
332 |
Q |
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|||||||||||||||||||| |
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| T |
19881 |
gggctgcgctcatgctaggt |
19900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 24777198 - 24777517
Alignment:
| Q |
13 |
taggcaaaggagcgtgcagtggaagccaactcggcatgccaatcaaacggcatggccgtggctaggttaaatatgaactagaagtgaagtctgttgggat |
112 |
Q |
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| T |
24777198 |
taggcaaaggagggtgcagtggaaaccaactcggcatgccaatcaaacggcatggccgtggctaggttaaatatgaactagaagtgaagtctgttgggat |
24777297 |
T |
|
| Q |
113 |
ggaagaagaaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24777298 |
ggaagaagaaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctct |
24777397 |
T |
|
| Q |
213 |
agcactcacaatgaaattgaaagaacatgtgatgaatatgtgagtggagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24777398 |
agcactcacaatgaaattgaaagaacatgtgatgaatatgtgagtagagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttag |
24777497 |
T |
|
| Q |
313 |
gggctgcgctcatgctaggt |
332 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
24777498 |
gggctgcgctcatgctaggt |
24777517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 10430867 - 10430785
Alignment:
| Q |
267 |
aatcaattggaacaaagcaatttgagaataaattttgaaatcttaggggctgcgctcatgctaggtgcaaaccctagcagagcga |
351 |
Q |
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||||||||| |||||||||||||| || ||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10430867 |
aatcaattgaaacaaagcaatttggtgatgaatttgaaaat--taggggctgcgctcatgctaggtgcaaaccctagaagagcga |
10430785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 30730090 - 30730040
Alignment:
| Q |
211 |
ctagcactcacaatgaaattgaaagaacatgtgatgaatatgtgagtggag |
261 |
Q |
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||||||||||||||||| ||||| || || || |||||||||||||||||| |
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| T |
30730090 |
ctagcactcacaatgaatttgaatgagcaagtaatgaatatgtgagtggag |
30730040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 24315232 - 24315189
Alignment:
| Q |
313 |
gggctgcgctcatgctaggtgcaaaccctagcagagcgaatcat |
356 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||| |||| |
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| T |
24315232 |
gggcagcgctcatgctaggtgcaaactctagcagagcgattcat |
24315189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 42622 - 42585
Alignment:
| Q |
31 |
gtggaagccaactcggcatgccaatcaaacggcatggc |
68 |
Q |
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|||| |||||||||||| |||||||||||||||||||| |
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| T |
42622 |
gtgggagccaactcggcctgccaatcaaacggcatggc |
42585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 16600825 - 16600868
Alignment:
| Q |
314 |
ggctgcgctcatgctaggtgcaaaccctagcagagcgaatcatg |
357 |
Q |
| |
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| T |
16600825 |
ggctgcgctcttgctaggtgcaaaccctaacagagcgattcatg |
16600868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 351
Target Start/End: Complemental strand, 7653168 - 7653134
Alignment:
| Q |
317 |
tgcgctcatgctaggtgcaaaccctagcagagcga |
351 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
7653168 |
tgcgctcttgctaggtgcaaaccctagcagagcga |
7653134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 27541074 - 27541110
Alignment:
| Q |
313 |
gggctgcgctcatgctaggtgcaaaccctagcagagc |
349 |
Q |
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||||||||||| ||||||||||||||||||| ||||| |
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| T |
27541074 |
gggctgcgctcttgctaggtgcaaaccctagtagagc |
27541110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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