View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_49 (Length: 391)
Name: NF0412_low_49
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 29 - 367
Target Start/End: Original strand, 49755254 - 49755592
Alignment:
| Q |
29 |
aaattatactatagtagaaattctaaaggaaattctagctcccaaaatggtggcttgtcacactgtgccttacccttatgctgttttttattgtcatggc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49755254 |
aaattatactatagtagaaattctaaaggaaattctagctcccaaaatggtggcttgtcacactgtgccttacccttatgctgttttttattgtcatggc |
49755353 |
T |
|
| Q |
129 |
caagaaagtgataatagggtgtatagagcttcattggttggtgagaatggagataaggtggaagctatggcggtttgtcatatggatacatcacaatggg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49755354 |
caagaaagtgataatagggtgtatagagcttcattggttggtgagaatggagataaggtggaagctatggcggtttgtcatatggatacatcacaatggg |
49755453 |
T |
|
| Q |
229 |
caccaagtcatgtttcatttcaagttcttgaggttacaccaggaacctcttctgtgtgtcactttttcccagcggataattacatctgggtccctaaatt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49755454 |
caccaagtcatgtttcatttcaagttcttgaggttacaccaggaacctcttctgtgtgtcactttttcccagcggataattacatctgggtccctaaatt |
49755553 |
T |
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| Q |
329 |
gaaatcacaaggttcttctaggatgtgatttcaagctat |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
49755554 |
gaaatcacaaggttcttctaggatgtgatttcaagctat |
49755592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 360
Target Start/End: Complemental strand, 54449020 - 54448689
Alignment:
| Q |
29 |
aaattatactatagtagaaattctaaaggaaattctagctcccaaaatggtggcttgtcacactgtgccttacccttatgctgttttttattgtcatggc |
128 |
Q |
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|||||| || |||||||||||| | | |||||||| |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
54449020 |
aaattacacaatagtagaaattatgatggaaattcgagctccaaagatggtggcttgtcacactgtgccttatccttatgctgttttttattgtcatagt |
54448921 |
T |
|
| Q |
129 |
caagaaagtgataatagggtgtatagagcttcattggttggtgagaatggagataaggtggaagctatggcggtttgtcatatggatacatcacaatggg |
228 |
Q |
| |
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||||||||||| ||||||||||||| || || ||||| |||||||||||||||||||| || || |||| ||||||||| | |||||||||||||||| |
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| T |
54448920 |
caagaaagtgagaatagggtgtataaagttttattggggggtgagaatggagataaggttgaggccatggtggtttgtcacttagatacatcacaatggg |
54448821 |
T |
|
| Q |
229 |
caccaagtcatgtttcatttcaagttcttgaggttacaccaggaacctcttctgtgtgtcactttttcccagcggataattacatctgggtccctaaatt |
328 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||| | |
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| T |
54448820 |
cacctagtcatgtttcatttcaagttcttggtgttacaccaggaagctcttctgtgtgtcattttttcccagcggacaattacatttgggtccctaaagt |
54448721 |
T |
|
| Q |
329 |
gaaatcacaaggttcttctaggatgtgatttc |
360 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
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| T |
54448720 |
gaaatcacaaggttcttctagcatgtgatttc |
54448689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 65 - 329
Target Start/End: Original strand, 26208560 - 26208824
Alignment:
| Q |
65 |
agctcccaaaatggtggcttgtcacactgtgccttacccttatgctgttttttattgtcatggccaagaaagtgataatagggtgtatagagcttcattg |
164 |
Q |
| |
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|||||| || |||||||| ||||||||| ||||||||||||||||||| || ||||| ||| ||||||||||||| |||||| | ||||||| |||| | |
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| T |
26208560 |
agctccaaagatggtggcatgtcacactatgccttacccttatgctgtattctattgccatagccaagaaagtgaaaataggatatatagagtttcactt |
26208659 |
T |
|
| Q |
165 |
gttggtgagaatggagataaggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcatgtttcatttcaagttcttgaggtta |
264 |
Q |
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|| ||||| ||||| |||| |||||||||||||| ||||||||||||||||| || || |||| || |||||||||||||||| ||||||| ||| |
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| T |
26208660 |
gtcggtgataatggggatatggtggaagctatggttgtttgtcatatggatacttctcattggggacatggtcatgtttcatttcaggttcttggtgttg |
26208759 |
T |
|
| Q |
265 |
caccaggaacctcttctgtgtgtcactttttcccagcggataattacatctgggtccctaaattg |
329 |
Q |
| |
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||||||| ||| ||| ||||||||||| || || ||||||| ||| ||||| || |||||| |
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| T |
26208760 |
tgccaggaagttctaatgtctgtcacttttttcctgctgataatttcatatgggttccaaaattg |
26208824 |
T |
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