View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_5 (Length: 579)
Name: NF0412_low_5
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_5 |
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| [»] scaffold0522 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 37 - 442
Target Start/End: Complemental strand, 37138506 - 37138114
Alignment:
| Q |
37 |
cattataagatgctaaacaagtagaaatcagcaaacttgatttaatatgtttcgaaacataagaacacatgaaactaaaaataaagcacacttgtatcca |
136 |
Q |
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| T |
37138506 |
cattatacgatgctaaacaagtagaaataagcaaacttgatttaatatgtttcgaaacataagaacacatgagactaaaaataaagcacacttgtatcca |
37138407 |
T |
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| Q |
137 |
aaaatccaaactttcacaccaatctctaacatattctaaataacataaattgactacggataaaaatttaatgtcattatattatccaacccatatgagc |
236 |
Q |
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| T |
37138406 |
aaaatccaaactttcacaccaatctctaacatattctaaataacataaattgactacggataaaaatttaatgtcattatattatccaacccatatgagc |
37138307 |
T |
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| Q |
237 |
attactaatctctaccattaaatattctaactattacatcatatggttctaccatctacttcactaggaatattcgttttgtaatcattacaaaacaaaa |
336 |
Q |
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| T |
37138306 |
attactaatctctaccattaaatattctaactattacatcatatggttctaccatctacttcactacgaatattcgttttgtaatcattacaaaacacaa |
37138207 |
T |
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| Q |
337 |
cnnnnnnnnnngtctttgagctcaaattaacatatgccaggcatgttgttccaatttgatccaagagtccaagcaaattcttgattggtgggaccgcctt |
436 |
Q |
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| T |
37138206 |
-------------ctttgagctcaaattaacatatgcctggcatgttgttccaatttgatccaagagtccaagcaaattcttgattggtgggaccgcttt |
37138120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 500 - 571
Target Start/End: Original strand, 2665080 - 2665151
Alignment:
| Q |
500 |
cctattacgcctgtagttgttactcctcctgcccctgttacgctttccccaattatcccccttgtctctgct |
571 |
Q |
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| T |
2665080 |
cctattacgcctgtagttgttactcctccttcccctgttacgctttccccaattatcccccttgtccctgct |
2665151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 500 - 553
Target Start/End: Original strand, 2664924 - 2664977
Alignment:
| Q |
500 |
cctattacgcctgtagttgttactcctcctgcccctgttacgctttccccaatt |
553 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| || |||||||| |
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| T |
2664924 |
cctattacgcctgtcgttgttactcctcctgcccctgttacggttcccccaatt |
2664977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 553
Target Start/End: Complemental strand, 727 - 690
Alignment:
| Q |
516 |
ttgttactcctcctgcccctgttacgctttccccaatt |
553 |
Q |
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| T |
727 |
ttgttacgcctcctgcccctgttacgcttcccccaatt |
690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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