View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_50 (Length: 390)
Name: NF0412_low_50
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 363
Target Start/End: Complemental strand, 7163024 - 7162670
Alignment:
| Q |
9 |
gagatgaagggacggaaggaggctgttgtaaattccattaaactcaaaccaacatcaagagccaaaataagatacacaagccacaaaatgatactattga |
108 |
Q |
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| T |
7163024 |
gagatgaagggagggaaggaggctgttgtaaattccattaaactcaaaccaacatcaagagccaaaataagatacacaagccacaaaatgatactattga |
7162925 |
T |
|
| Q |
109 |
aaaaggcaattaagaaatcaatggagaagaagggaggaaaggaggcaaagtttgctaagacgatgaggataattaagccgaaacgctcaaaaccaaaacg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7162924 |
aaaaggcaattaagaaatcaatggagaagaagggaggaaaggaggcaaagtttgctaagacgatgaggataattaagccggaacgctcaaaaccaaaacg |
7162825 |
T |
|
| Q |
209 |
tcctcgtcgtctcgcctttaaaatccgtccttctagattatccactatgtctaattctcaagacttgcccatcattcaaccaggtcagtttatcactaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7162824 |
tcctcgtcgtctcgcctttaaaatccgtccttctagattatccactatgtctaattctcaagacttgcccatcattcaaccaggtcagttgatcactaat |
7162725 |
T |
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| Q |
309 |
tctaaagacattccgaatcattcattagtttatctacctaatttggattctattg |
363 |
Q |
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| T |
7162724 |
tctaaagacattccgaatcattcattagtttatctacctaatttggattctattg |
7162670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 7145919 - 7145861
Alignment:
| Q |
96 |
atgatactattgaaaaaggcaattaagaaatcaatggagaagaagggaggaaaggaggc |
154 |
Q |
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|||| ||| |||| ||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
7145919 |
atgacactcttgagaaaggcaatgaagaaatcaatggagaagaagggaggtaaggaggc |
7145861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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