View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_51 (Length: 387)
Name: NF0412_low_51
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 15607132 - 15607475
Alignment:
| Q |
1 |
atttgtacgtttcatatttattaggcattgacactcatatttatgtttgtcctgaaagagacgaaactcttatctcctttgtagtgtatcaaaaagtaaa |
100 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||| || | ||||||||||||||||||| |
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| T |
15607132 |
atttgtacttttcatatttattaggtattgacactcatatttatgtttatcctgaaagagatgaaactcttatctactatatagtgtatcaaaaagtaaa |
15607231 |
T |
|
| Q |
101 |
tgttaatagtaccctctttattcacgaaatgttggcactgaggattttggtacatggtgatatgtgttgtgcagggattaccaacaaggtagcaaaaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
15607232 |
tgttaatagtaccctctttattcacgaaatgttggcactgaggattttggtacatggtgatatgtgtgatgcagggattaccaacaaggtggcaaaaact |
15607331 |
T |
|
| Q |
201 |
ctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatggtaaaaatcacttaattccagtttatatctcgaattttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
15607332 |
ctcacctcaaagctaaaaaactcattgacgaaatccgttattggttcactcaatccaatggtaaaaatcacttaattccggtttataactcgaattttgt |
15607431 |
T |
|
| Q |
301 |
tttattctgattctgaacatcgttccttcccaaagccacttcat |
344 |
Q |
| |
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||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
15607432 |
tttattctgattctgtacattgttccttcccaaagccacttcat |
15607475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 15638652 - 15638994
Alignment:
| Q |
1 |
atttgtacgtttcatatttattaggcattgacactcatatttatgtttgtcctgaaagagacgaaactcttatctcctttgtagtgtatcaaaaagtaaa |
100 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||||||||||| || |||||||||||| ||||||||||||| || | ||| ||||||||||||||| |
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| T |
15638652 |
atttgtacttttcatatttattaggtattgacactcatatttatgcttatcctgaaagagatgaaactcttatctactatatagagtatcaaaaagtaaa |
15638751 |
T |
|
| Q |
101 |
tgttaatagtaccctctttattcacgaaatgttggcactgaggattttggtacatggtgatatgtgttgtgcagggattaccaacaaggtagcaaaaact |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
15638752 |
tgttaatagtaccctctttattcacgaaatgtttgcactgaggattttggtacatggtgatatgtgtgatgcagggattaccaacaaggtggcaaaaact |
15638851 |
T |
|
| Q |
201 |
ctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatggtaaaaatcacttaattccagtttatatctcgaattttgt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
15638852 |
ctcacctcaaagctaaaaaactcattgacgaaatccgttattggttcactcaatccaatggtaaaaatcacttaattccagtttataactcgaa-tttgt |
15638950 |
T |
|
| Q |
301 |
tttattctgattctgaacatcgttccttcccaaagccacttcat |
344 |
Q |
| |
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|||||||||||||| |||| ||||||||||| ||||||||||| |
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|
| T |
15638951 |
tttattctgattctatacattgttccttcccagagccacttcat |
15638994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 66 - 344
Target Start/End: Original strand, 15615542 - 15615820
Alignment:
| Q |
66 |
actcttatctcctttgtagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggcactgaggattttggtacatggtgatatgt |
165 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15615542 |
actcttatctactatatagagtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgtttgcactgaggattttggtacatggtgatatgt |
15615641 |
T |
|
| Q |
166 |
gttgtgcagggattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatggtaaa |
265 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
15615642 |
gtgatgcagggattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattgacgaaatacgttattggttcactcaatccaatggtaaa |
15615741 |
T |
|
| Q |
266 |
aatcacttaattccagtttatatctcgaattttgttttattctgattctgaacatcgttccttcccaaagccacttcat |
344 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
15615742 |
aatcacttaattccggtttataactcgaattttgttttattctgattctgtacattgttccttcccaaagccacttcat |
15615820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 15649813 - 15649991
Alignment:
| Q |
1 |
atttgtacgtttcatatttattaggcattgacactcatatttatgtttgtcctgaaagagacgaaactcttatctcctttgtagtgtatcaaaaagtaaa |
100 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||| || | |||||||||||| |||||| |
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| T |
15649813 |
atttgtacttttcatagttattaggtattgacactcatatttatgtttatcctgaaagagatgaaactcttatctactatatagtgtatcaaacagtaaa |
15649912 |
T |
|
| Q |
101 |
tgttaatagtaccctctttattcacgaaatgttggcactgaggattttggtacatggtgatatgtgttgtgcagggatt |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
15649913 |
tgttaatagtaccctctttattcacgaaatgttggcactgaggattttggtacatggtgatatgtgtgatgcagggatt |
15649991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 15626053 - 15626234
Alignment:
| Q |
1 |
atttgtacgtttcatatttattaggcattgacactcatatttatgtttgtcctgaaagagacgaaactcttatctcctttgtagtgtatcaaaaagtaaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||| || | |||||||||||||| |||| |
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| T |
15626053 |
atttgtacttttcatatttattaggtattgacactcatatttatgtttatcctgaaagagatgaaactcttatctactatatagtgtatcaaaaattaaa |
15626152 |
T |
|
| Q |
101 |
tgttaa---tagtaccctctttattcacgaaatgttggcactgaggattttggtacatggtgatatgtgttgtgcagggatt |
179 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15626153 |
tgttaatagtagtaccctctttattcacgaaatgtttgcactgaggattttggtacatggtgatatgtgtgatgcagggatt |
15626234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 176 - 344
Target Start/End: Complemental strand, 16673161 - 16672992
Alignment:
| Q |
176 |
gattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatggtaaaaatcacttaa |
275 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |||||||||||| || ||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
16673161 |
gattaccaacaaggtggcgaaaactctcacctcaaagctgaaaaactcattggtgacgtccgttcttggttcactcaatccaatggtaaaaatcacttaa |
16673062 |
T |
|
| Q |
276 |
ttccagtttatatctcgaattttgttttattctgattctgaac-atcgttccttcccaaagccacttcat |
344 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||| | ||||||||||| || ||||||||||| |
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|
| T |
16673061 |
ttctcgtttataactcgaattttgttttattctgattctattcaatcgttccttcgcagagccacttcat |
16672992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 15626352 - 15626436
Alignment:
| Q |
176 |
gattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatg |
260 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |
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|
| T |
15626352 |
gattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattaacgaaatccgttcttggttcactcaatccaatg |
15626436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 15650109 - 15650193
Alignment:
| Q |
176 |
gattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatg |
260 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||| |
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|
| T |
15650109 |
gattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattaacgaaatccgttcttggttcattcaatccaatg |
15650193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15615487 - 15615530
Alignment:
| Q |
1 |
atttgtacgtttcatatttattaggcattgacactcatatttat |
44 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
15615487 |
atttgtacttttcatatttattaggtattgacactcatatttat |
15615530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 13738544 - 13738453
Alignment:
| Q |
82 |
tagtgtatcaaaaagtaaatgttaa--tagtaccctctttattca----cgaaatgttggcactgaggattttggtacatggtgatatgtgt |
167 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
13738544 |
tagtgtatcaaaaagtaaatgtcaatctagcaccctctttatgcatgactgaaatgttggcactgaggatttttgtgcatggtgatatgtgt |
13738453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 13765376 - 13765273
Alignment:
| Q |
82 |
tagtgtatcaaaaagtaaatgttaat--agtaccctctttattcacgaa----atgttggcactgaggattttggtacatggtgatatgtgttgtgcagg |
175 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||| | ||| |||||||| ||||| ||||| || ||||||||||||||| |||||| |
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|
| T |
13765376 |
tagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgagaatttttgtgcatggtgatatgtgtgatgcagg |
13765277 |
T |
|
| Q |
176 |
gatt |
179 |
Q |
| |
|
|||| |
|
|
| T |
13765276 |
gatt |
13765273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 35080271 - 35080350
Alignment:
| Q |
86 |
gtatcaaaaagtaaatgttaat--agtaccctctttattcacgaaatgttggcactgaggattttggtacatggtgatat |
163 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||| | | |||||||||| |||||||||||| || |||||||||| |
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|
| T |
35080271 |
gtatcaaacagtaaatgttaatctagcaccctctttttgaatgaaatgttggtactgaggatttttgtggatggtgatat |
35080350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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