View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_52 (Length: 386)

Name: NF0412_low_52
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_52
NF0412_low_52
[»] scaffold0607 (1 HSPs)
scaffold0607 (30-253)||(4964-5187)
[»] chr7 (21 HSPs)
chr7 (30-253)||(30465963-30466186)
chr7 (30-253)||(3962915-3963138)
chr7 (31-253)||(25611985-25612207)
chr7 (30-176)||(23361662-23361807)
chr7 (30-229)||(24268342-24268541)
chr7 (30-253)||(42851260-42851483)
chr7 (33-222)||(9360069-9360258)
chr7 (36-136)||(4595657-4595757)
chr7 (294-340)||(4187686-4187732)
chr7 (290-328)||(23150657-23150695)
chr7 (294-335)||(28256575-28256616)
chr7 (44-229)||(33336610-33336795)
chr7 (299-335)||(20101908-20101944)
chr7 (294-340)||(21412948-21412994)
chr7 (29-67)||(24564503-24564541)
chr7 (294-328)||(33235056-33235090)
chr7 (294-328)||(36566420-36566454)
chr7 (290-328)||(40904709-40904747)
chr7 (294-334)||(1286806-1286846)
chr7 (292-340)||(29591113-29591161)
chr7 (290-334)||(34951305-34951349)
[»] chr6 (5 HSPs)
chr6 (30-253)||(32956733-32956956)
chr6 (36-253)||(7436162-7436378)
chr6 (290-340)||(17180135-17180185)
chr6 (288-328)||(2840120-2840160)
chr6 (300-340)||(20575500-20575540)
[»] chr5 (17 HSPs)
chr5 (30-253)||(29242728-29242951)
chr5 (30-253)||(9610123-9610346)
chr5 (30-253)||(30797419-30797642)
chr5 (33-175)||(27453093-27453235)
chr5 (294-340)||(18951385-18951431)
chr5 (288-334)||(20728604-20728650)
chr5 (294-335)||(20729045-20729086)
chr5 (288-335)||(1722516-1722563)
chr5 (288-335)||(18249034-18249081)
chr5 (294-340)||(32660281-32660327)
chr5 (294-335)||(18951325-18951366)
chr5 (290-335)||(36418401-36418446)
chr5 (290-334)||(1722578-1722622)
chr5 (300-340)||(6336171-6336211)
chr5 (290-334)||(30737818-30737862)
chr5 (290-334)||(35891263-35891307)
chr5 (288-328)||(36417902-36417942)
[»] chr4 (10 HSPs)
chr4 (30-253)||(26429813-26430036)
chr4 (30-252)||(54551903-54552124)
chr4 (33-253)||(48445941-48446161)
chr4 (33-253)||(22359854-22360074)
chr4 (33-175)||(26006687-26006829)
chr4 (36-134)||(33845722-33845820)
chr4 (30-66)||(17424443-17424479)
chr4 (290-333)||(35046550-35046593)
chr4 (288-335)||(41735828-41735875)
chr4 (292-334)||(42115652-42115694)
[»] chr1 (11 HSPs)
chr1 (30-253)||(46091179-46091400)
chr1 (294-328)||(39302756-39302790)
chr1 (294-328)||(44964022-44964056)
chr1 (290-340)||(48352738-48352788)
chr1 (33-78)||(15303209-15303254)
chr1 (289-340)||(10686710-10686761)
chr1 (290-324)||(35701519-35701553)
chr1 (290-320)||(49650591-49650621)
chr1 (294-335)||(44964075-44964116)
chr1 (294-334)||(8902843-8902883)
chr1 (290-326)||(27351129-27351165)
[»] scaffold0016 (1 HSPs)
scaffold0016 (30-253)||(186420-186644)
[»] chr8 (13 HSPs)
chr8 (30-253)||(32577332-32577555)
chr8 (34-196)||(5839121-5839279)
chr8 (36-253)||(32283392-32283609)
chr8 (294-335)||(34686908-34686949)
chr8 (294-340)||(25737614-25737660)
chr8 (301-337)||(14871027-14871063)
chr8 (294-334)||(25730134-25730174)
chr8 (290-328)||(8713863-8713901)
chr8 (294-340)||(36359982-36360028)
chr8 (290-335)||(25737121-25737166)
chr8 (290-334)||(13771878-13771922)
chr8 (294-334)||(30576671-30576711)
chr8 (294-334)||(31169496-31169536)
[»] scaffold0577 (1 HSPs)
scaffold0577 (30-253)||(2820-3043)
[»] chr2 (11 HSPs)
chr2 (33-253)||(38452317-38452537)
chr2 (30-229)||(10213138-10213337)
chr2 (33-247)||(23770399-23770613)
chr2 (73-253)||(23797374-23797554)
chr2 (290-335)||(30907151-30907196)
chr2 (288-334)||(15506507-15506553)
chr2 (301-331)||(39301889-39301919)
chr2 (294-335)||(31264006-31264047)
chr2 (294-335)||(34336116-34336157)
chr2 (294-334)||(11871753-11871793)
chr2 (294-334)||(30907316-30907356)
[»] chr3 (5 HSPs)
chr3 (30-253)||(43018976-43019199)
chr3 (36-164)||(51192499-51192627)
chr3 (30-190)||(13443508-13443668)
chr3 (30-220)||(21689068-21689258)
chr3 (29-124)||(23483994-23484089)
[»] scaffold0200 (1 HSPs)
scaffold0200 (33-253)||(27562-27781)
[»] scaffold0011 (1 HSPs)
scaffold0011 (33-175)||(57772-57914)
[»] scaffold0004 (1 HSPs)
scaffold0004 (33-175)||(215838-215980)
[»] scaffold0201 (1 HSPs)
scaffold0201 (29-120)||(20084-20175)
[»] scaffold0746 (2 HSPs)
scaffold0746 (294-340)||(531-577)
scaffold0746 (290-334)||(39-83)
[»] scaffold0070 (1 HSPs)
scaffold0070 (294-340)||(28626-28672)
[»] scaffold0041 (1 HSPs)
scaffold0041 (290-328)||(45271-45309)


Alignment Details
Target: scaffold0607 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 5187 - 4964
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5187 accttattgtttcgatgcttccaaatactccaaagggtcacactgaaaatttgcttttgttgctgatccaggtgttgtaggatagcaaacacattggttg 5088  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||    
T  5087 aaaagctgacattaatataaaaaacaaccatcaaagggctccataagccaatacgttgccaacaaagcatacttttactacacataaagaacaaatgagt 4988  T
Q  230 gttattctctccaaaatcatcaca 253  Q
    | ||| |||||||| |||||||||    
T  4987 gctatcctctccaatatcatcaca 4964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 30466186 - 30465963
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30466186 accttattgtttcgatgctttcaaatacttcaaagggtcacactgaaaagttgcttttgctgctgatccaggtgttgtaggatagcaaatacattggttg 30466087  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||||||||||||||||||||||||| | |||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||||| |||||    
T  30466086 gaaagctgacattaatatcaaaaacaaccatcaaagggctccataagtcaatatgttggcaacaaagcatacttttactacacataaagaacaagtgagt 30465987  T
Q  230 gttattctctccaaaatcatcaca 253  Q
    ||||| ||||||||||||||||||    
T  30465986 gttatcctctccaaaatcatcaca 30465963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 3962915 - 3963138
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962915 accttattgtttcgatgcttccaaatactccaaagggtcacactgaagatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 3963014  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||| ||||||||||||||||| ||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||||  |    
T  3963015 gaaaactgacattaatatcaaagacagccatcaaagggctccataagccaatacgttgccaacaaagcatacttttactacacataaagaacaaatggtt 3963114  T
Q  230 gttattctctccaaaatcatcaca 253  Q
    | ||| |||||| |||||||||||    
T  3963115 gctatcctctccgaaatcatcaca 3963138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 31 - 253
Target Start/End: Original strand, 25611985 - 25612207
Alignment:
Q  31 ccttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttga 130  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  25611985 ccttattgtttcgatgcttccaaatactccaaagggtcacattgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaatacattggttgg 25612084  T
Q  131 aaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagtg 230  Q
    ||| ||||||||||||||||| ||| | |||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||||  ||    
T  25612085 aaaactgacattaatatcaaagacaaccatcaaagggctccataagccaatacgttgccaacaaagcatacttttactacacataaagaacaaatggttg 25612184  T
Q  231 ttattctctccaaaatcatcaca 253  Q
     ||| |||||| |||||||||||    
T  25612185 ctatcctctccgaaatcatcaca 25612207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 23361807 - 23361662
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23361807 accttattgtttcgatgcttccaaatactccaaagg-tcacactgaaagtttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 23361709  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataag 176  Q
     ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  23361708 gaaagctgacattaatatcaaagacagccatcaaagggctccataag 23361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 24268342 - 24268541
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    |||||||||||| | |||||||| |||||||| || ||| | |  || | ||||||||||||||||||||| |||||||  ||||||||||||| || ||    
T  24268342 accttattgttttggtgcttccatatactccatagagtcccaccaaatacttgcttttgctgctgatccagatgttgtaaaatagcaaacacatcgggtg 24268441  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||||||   |||| |||||||  |||  |||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  24268442 gaaagcttgtattagtatcaaaggcagacatcaaagggctccataagccaatgtgctgccaacaaagcatgcttttactacacataaagaacatatgagt 24268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 42851483 - 42851260
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||| |||||| |||||||||| ||||| | ||||||||| ||||| |||||||||| || ||||||||||||||||||||    
T  42851483 accttattgtttcgatgcttccatatactctaaagggtcacactgaatacttgcttttgttgctggtccaggtgttataagatagcaaacacattggttg 42851384  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||| ||  ||  | ||||||||||||  |||||| |  |||||||  || || | |||||||||| | | |||||| ||||| |||| |||||||| ||    
T  42851383 gaaaacttgcagaactatcaaaaacagtcatcaaaagattccataatccactacgttgccaacaaatcttgcttttattacacataaaaaacaaatgggt 42851284  T
Q  230 gttattctctccaaaatcatcaca 253  Q
     |||| ||| ||||||||||||||    
T  42851283 attatcctcaccaaaatcatcaca 42851260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 9360258 - 9360069
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaa 132  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||| || || ||||||| |  |||||||||||||||||||| ||    
T  9360258 ttattgtttcgatgcttccatatactccagagggtcacactgaaaacttgcttttgctgttggtcaaggtgttatgagatagcaaacacattggttggaa 9360159  T
Q  133 agctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaaca 222  Q
    ||||  ||| ||||||||||||||| |||||| | || |||||  || |  |||||||||||| | | ||||||   |||||||||||||    
T  9360158 agcttgcatcaatatcaaaaacagccatcaaaagacttcataatccactccgctgccaacaaatcttgcttttatcccacgtaaagaaca 9360069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 4595657 - 4595757
Alignment:
Q  36 ttgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaaagc 135  Q
    ||||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||||    
T  4595657 ttgtttcgatgcttccatatactccaaaggatcacactgaaaacttgcttttgctgctggtccgggtgttgtaagatagcaaacacattggttggaaagc 4595756  T
Q  136 t 136  Q
    |    
T  4595757 t 4595757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 4187732 - 4187686
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  4187732 aattttcaagttagtcctttaaattttaaaagttttaaataggtcat 4187686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 23150657 - 23150695
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttt 328  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  23150657 acataattctcaagttagtcctttaaattttgaaagttt 23150695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 28256575 - 28256616
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  28256575 aattctcaagttagtcctttaaatttcaaaagtttcaaatag 28256616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 33336610 - 33336795
Alignment:
Q  44 atgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaaagctgacatta 143  Q
    |||||||||||||||||| ||||| || |  |||| ||||||||| ||||||| ||  |||| || ||||| ||||||||| || | ||||||  ||  |    
T  33336610 atgcttccaaatactccatagggtaacaccaaaaacttgcttttgttgctgatacaaatgttatatgatagaaaacacattagtcggaaagcttgcacca 33336709  T
Q  144 atatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
      |||||| ||| | |||||||||||  |||| |  |   |||||||||||||||  |||||||| ||| |||| |||||||||||    
T  33336710 gaatcaaagacaaccatcaaagggctagataacatgaagcgctgccaacaaagcacgcttttactgcacataaaaaacaaatgagt 33336795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 20101908 - 20101944
Alignment:
Q  299 tcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    ||||||||||||||||| |||||||||||||||||||    
T  20101908 tcaagttagtcctttaagttttaaaagttttaaatag 20101944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 21412948 - 21412994
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| ||||    
T  21412948 aattttcaagttagtcctttaagtttcaaaagttttaaatagatcat 21412994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 24564503 - 24564541
Alignment:
Q  29 aaccttattgtttcgatgcttccaaatactccaaagggt 67  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  24564503 aaccttattgtttctatgcgtccaaatactccaaagggt 24564541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 33235056 - 33235090
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttt 328  Q
    ||||||||||||| |||||||||||||||||||||    
T  33235056 aattctcaagttaatcctttaaattttaaaagttt 33235090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 36566420 - 36566454
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttt 328  Q
    |||||||||||||||||||||||||| ||||||||    
T  36566420 aattctcaagttagtcctttaaatttcaaaagttt 36566454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 40904709 - 40904747
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttt 328  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  40904709 acataattctcaagttagtcttttaagttttaaaagttt 40904747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 1286846 - 1286806
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    |||| |||| |||||||||||| ||||||||||||||||||    
T  1286846 aattttcaaattagtcctttaagttttaaaagttttaaata 1286806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 29591161 - 29591113
Alignment:
Q  292 ataattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||||| ||||||||||||||||| ||| ||||||||||| ||| ||||    
T  29591161 ataattatcaagttagtcctttaagtttcaaaagttttaattaggtcat 29591113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 34951305 - 34951349
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    |||||||||| ||||||||||||||| ||| |||||||| |||||    
T  34951305 acataattcttaagttagtcctttaagtttcaaaagtttcaaata 34951349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 32956956 - 32956733
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32956956 accttattgtttcgatgcttccaaatactccaaagggtcacactgaaagtttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 32956857  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||||||||||||||||||||| ||||| |||||||||||||||||| || || | ||||||||||||||||||||||||||| |||||||||||||  |    
T  32956856 gaaagctgacattaatatcaaagacagccatcaaagggctccataagccagtacgttgccaacaaagcatacttttactacacataaagaacaaatggtt 32956757  T
Q  230 gttattctctccaaaatcatcaca 253  Q
    | ||| ||||||||||||||||||    
T  32956756 gctatcctctccaaaatcatcaca 32956733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 7436162 - 7436378
Alignment:
Q  36 ttgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaaagc 135  Q
    ||||||| ||||||||| |||||| | |||||||| ||||||| ||||||||| || |||||||||||||||| |||||||||||||||||||| |||||    
T  7436162 ttgtttcaatgcttccatatactctagagggtcacactgaaaacttgcttttg-tgttgatccaggtgttgtaagatagcaaacacattggttggaaagc 7436260  T
Q  136 tgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagtgttatt 235  Q
    |  ||| ||||||||||||||| | ||||   ||| ||||  || | ||||||||||||| | | ||||||  |||| ||||||||| ||| ||  |||     
T  7436261 ttgcatcaatatcaaaaacagccaccaaaacactctataaatcactctgctgccaacaaatcttgcttttatcacacataaagaacagatgggtactatc 7436360  T
Q  236 ctctccaaaatcatcaca 253  Q
    ||| ||||||||||||||    
T  7436361 ctcaccaaaatcatcaca 7436378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 17180185 - 17180135
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||||||| ||||||||||||||||| |||||||||||| |||||| ||||    
T  17180185 acataattttcaagttagtcctttaagttttaaaagtttcaaatagatcat 17180135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 2840160 - 2840120
Alignment:
Q  288 taacataattctcaagttagtcctttaaattttaaaagttt 328  Q
    |||||||||||||||||||||| ||||| ||| ||||||||    
T  2840160 taacataattctcaagttagtcatttaagtttcaaaagttt 2840120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 20575500 - 20575540
Alignment:
Q  300 caagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||||||||||||||| |||||||||||| |||||| ||||    
T  20575500 caagttagtcctttaagttttaaaagtttcaaataggtcat 20575540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 29242728 - 29242951
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29242728 accttattgtttcgatgcttccaaataatccaaagggtcacactgaacatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 29242827  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     |||| |||||||||||||||| |||||  |||||||| |||||||  ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  29242828 gaaagttgacattaatatcaaagacagccgtcaaagggttccataaaccaatatgttgccaacaaagcatacttttactacacataaagaaaaaatgagt 29242927  T
Q  230 gttattctctccaaaatcatcaca 253  Q
    ||||| ||||||||||||||||||    
T  29242928 gttatcctctccaaaatcatcaca 29242951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 9610123 - 9610346
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9610123 accttattgtttcgatgcttccaaatactccaaagggtcacactgaagatttgcttttgttgctgatccaggtgttgtaggatagcaaacacattggttg 9610222  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||| ||||||||||||||||| ||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||||  |    
T  9610223 gaaaactgacattaatatcaaagacagccatcaaagggctccataagccaatacgttgccaacaaagcatacttttactacacataaagaacaaatggtt 9610322  T
Q  230 gttattctctccaaaatcatcaca 253  Q
    | ||| |||||| |||||||||||    
T  9610323 gctatactctccgaaatcatcaca 9610346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 30797419 - 30797642
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30797419 accttattgtttcgatgcttccaaatactccaaagagtcacactaaaaatttgcttttgctgctgatccaggtgttgtaagatagcaaacacattggttg 30797518  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||| ||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||  |    
T  30797519 gaaaactgacattaatatcaaagacagccatcaaagggctccataagccaatatgttgccaacaaagcatacttttactgcacataaagaacaaatggtt 30797618  T
Q  230 gttattctctccaaaatcatcaca 253  Q
    | ||| |||||| |||||||||||    
T  30797619 gctatcctctccgaaatcatcaca 30797642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 27453093 - 27453235
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaa 132  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||| || |||||||||| ||||||||||||||||| || ||    
T  27453093 ttattgtttcgatgcttccatatactccaaagggtcacactgaaaacttgcttttgttgctggtcgaggtgttgtaagatagcaaacacattggatggaa 27453192  T
Q  133 agctgacattaatatcaaaaacagcgatcaaagggctccataa 175  Q
    | ||  ||| ||||||||||||| | |||||| | ||||||||    
T  27453193 aacttgcatcaatatcaaaaacatccatcaaaagactccataa 27453235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 18951385 - 18951431
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  18951385 aattctcaagttagtcctttaagttttaaaagttttaaataggtcat 18951431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 20728604 - 20728650
Alignment:
Q  288 taacataattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||    
T  20728604 taacagaattctcaagttagtcctttaagttttaaaagtttcaaata 20728650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 20729086 - 20729045
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  20729086 aattttcaagttagtcctttaaattttaaaagtttcaaatag 20729045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 1722516 - 1722563
Alignment:
Q  288 taacataattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    ||||| ||||| |||||||||||||||| ||| |||||||||||||||    
T  1722516 taacaaaattcacaagttagtcctttaattttcaaaagttttaaatag 1722563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 18249034 - 18249081
Alignment:
Q  288 taacataattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    ||||| |||||||||||||||| ||||| ||| |||||||||||||||    
T  18249034 taacagaattctcaagttagtcatttaagtttcaaaagttttaaatag 18249081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 32660281 - 32660327
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||||||||||||||||||||| ||| |||||||| |||||| ||||    
T  32660281 aattctcaagttagtcctttaagtttcaaaagtttcaaataggtcat 32660327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 18951325 - 18951366
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    ||||| |||||||||||||||| ||| |||||||||||||||    
T  18951325 aattcccaagttagtcctttaagtttcaaaagttttaaatag 18951366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 36418446 - 36418401
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    |||||||| ||||||||||||||||| ||| |||||||| ||||||    
T  36418446 acataattttcaagttagtcctttaagtttcaaaagtttcaaatag 36418401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 1722578 - 1722622
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    ||||||||||||||||| |||||||| ||| |||||||| |||||    
T  1722578 acataattctcaagttaatcctttaagtttcaaaagtttcaaata 1722622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 6336171 - 6336211
Alignment:
Q  300 caagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||||||||||||||| ||| ||||||||||||||| ||||    
T  6336171 caagttagtcctttaagtttcaaaagttttaaataggtcat 6336211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 30737818 - 30737862
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    ||||||||||||| |||||| ||||| ||| ||||||||||||||    
T  30737818 acataattctcaaattagtcttttaagtttcaaaagttttaaata 30737862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 35891307 - 35891263
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    |||||||| ||||||||||||||||| ||| |||||||| |||||    
T  35891307 acataattttcaagttagtcctttaagtttcaaaagtttcaaata 35891263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 36417902 - 36417942
Alignment:
Q  288 taacataattctcaagttagtcctttaaattttaaaagttt 328  Q
    ||||| ||||||||||||||||||||||||||  |||||||    
T  36417902 taacagaattctcaagttagtcctttaaatttcgaaagttt 36417942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 26429813 - 26430036
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26429813 accttattgtttcgatgcttccaaatactccaaagggtcacactgaagatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 26429912  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||| |||||||| |||||||| ||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||||  |    
T  26429913 gaaaactgacattgatatcaaagacagccatcaaagggctccataagccaatacgttgccaacaaagcatacttttactacacataaagaacaaatggtt 26430012  T
Q  230 gttattctctccaaaatcatcaca 253  Q
    | ||| ||||||||||||||||||    
T  26430013 gctatcctctccaaaatcatcaca 26430036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 54552124 - 54551903
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||| ||||||||  ||||||| ||||||| ||||||||| || |||||||||||||||| |||||||||||| |||||||    
T  54552124 accttattgtttcgatgcttccatatactccag-gggtcacactgaaaacttgcttttgttgttgatccaggtgttgtaagatagcaaacacgttggttg 54552026  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||| || | || ||||| ||||| ||| |||||| |  |||||||  || || |||||||||||| ||| |||||| ||||| ||||||| ||||| ||    
T  54552025 gaaaacttaaatcaatataaaaaatagccatcaaaagaatccataatccactacgctgccaacaaatcatgcttttattacacataaagaataaatgggt 54551926  T
Q  230 gttattctctccaaaatcatcac 252  Q
    | ||| |||  ||||||||||||    
T  54551925 gctatcctcagcaaaatcatcac 54551903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 48446161 - 48445941
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaa 132  Q
    ||||| |||||||||||||| |||||||| || || || ||||||| ||| ||||| ||||| ||||||||||||| ||||||||||||||| |||| ||    
T  48446161 ttattatttcgatgcttccatatactccagagagttacactgaaaacttgtttttgttgctggtccaggtgttgtaagatagcaaacacatttgttggaa 48446062  T
Q  133 agctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagtgtt 232  Q
    ||||  ||| ||||||||||||||  |||||| | ||||||||  || |  |||||||||||| | | ||||||  |||| ||||||||| ||| ||  |    
T  48446061 agcttgcatcaatatcaaaaacagtcatcaaaagactccataatccactccgctgccaacaaatctttcttttatcacacataaagaacagatgggtact 48445962  T
Q  233 attctctccaaaatcatcaca 253  Q
    || ||| ||||||||| ||||    
T  48445961 atcctcgccaaaatcaacaca 48445941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 22359854 - 22360074
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaa 132  Q
    |||||||||||||||||||| |||||||| ||| |||| ||||||| ||||||||| | ||| ||  ||||||||| |||||||||||||||||||| ||    
T  22359854 ttattgtttcgatgcttccatatactccagaggatcacactgaaaacttgcttttgttactggtctcggtgttgtaagatagcaaacacattggttggaa 22359953  T
Q  133 agctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagtgtt 232  Q
    || |  ||| ||||||||||   || |||||| | ||||||||  || |  | |||||||||| | | ||||||  |||| ||||||||| ||| ||  |    
T  22359954 aggttgcatcaatatcaaaagttgccatcaaaagactccataatccactccgttgccaacaaatcttgcttttatcacacataaagaacatatgggtact 22360053  T
Q  233 attctctccaaaatcatcaca 253  Q
    || ||| ||||||||||||||    
T  22360054 atcctcaccaaaatcatcaca 22360074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 26006687 - 26006829
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaa 132  Q
    |||| ||||||||||||||| ||| |||| |||||||| ||||||| ||||||||| ||||| || |||||||||| ||||| |||||||||||||| ||    
T  26006687 ttatagtttcgatgcttccatatagtccagagggtcacactgaaaacttgcttttgttgctggtcaaggtgttgtaagatagaaaacacattggttggaa 26006786  T
Q  133 agctgacattaatatcaaaaacagcgatcaaagggctccataa 175  Q
    | ||  ||| || |||||||||| | |||||| | ||||||||    
T  26006787 aacttgcatcaacatcaaaaacaacaatcaaaagactccataa 26006829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 33845820 - 33845722
Alignment:
Q  36 ttgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaaag 134  Q
    ||||||||||||||||| |||||||| |||||||| ||||||| ||| ||||| || |||||||||||||||| |||| ||||||||||||||| ||||    
T  33845820 ttgtttcgatgcttccatatactccagagggtcacactgaaaacttgtttttgttgttgatccaggtgttgtaagataacaaacacattggttggaaag 33845722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 17424443 - 17424479
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaaggg 66  Q
    ||||||||||||||||||||||| |||||||||||||    
T  17424443 accttattgtttcgatgcttccatatactccaaaggg 17424479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 35046593 - 35046550
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaat 333  Q
    ||||||||| |||||||||||||||| ||| |||||||||||||    
T  35046593 acataattcccaagttagtcctttaagtttcaaaagttttaaat 35046550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 41735828 - 41735875
Alignment:
Q  288 taacataattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    ||||||||||| |||||||||||||||| ||| |||||||| ||||||    
T  41735828 taacataattcccaagttagtcctttaagtttcaaaagtttcaaatag 41735875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 42115652 - 42115694
Alignment:
Q  292 ataattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    |||||||||||||||||||||||| | | ||||||||||||||    
T  42115652 ataattctcaagttagtcctttaagtctcaaaagttttaaata 42115694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 9e-86; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 46091179 - 46091400
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46091179 accttattgtttcgatgctttcaaatacttcaaagggtcacactgaaaagttgtttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 46091278  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||||||||||||||||||||||||| | |||||||||||||||||| ||||| | |||||||||||||||||||||||||||  |||||| ||||||||    
T  46091279 gaaagctgacattaatatcaaaaacaaccatcaaagggctccataagccaatacgttgccaacaaagcatacttttactacac--aaagaataaatgagt 46091376  T
Q  230 gttattctctccaaaatcatcaca 253  Q
    ||||| ||||||||||||||||||    
T  46091377 gttatcctctccaaaatcatcaca 46091400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 39302790 - 39302756
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttt 328  Q
    |||||||||||||||||||||||||||||||||||    
T  39302790 aattctcaagttagtcctttaaattttaaaagttt 39302756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 44964056 - 44964022
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttt 328  Q
    |||||||||||||||||||||||||||||||||||    
T  44964056 aattctcaagttagtcctttaaattttaaaagttt 44964022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 48352788 - 48352738
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||| ||||    
T  48352788 acataattcccaagttagtcctttaagtttcaaaagttttaaataggtcat 48352738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 15303209 - 15303254
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaa 78  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||    
T  15303209 ttattgtttcgatgcttccatatactccagagggtcacactgaaaa 15303254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 10686761 - 10686710
Alignment:
Q  289 aacataattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||| |||||||||||||||| ||||| |||||||||||| |||||| ||||    
T  10686761 aacagaattctcaagttagtcatttaagttttaaaagtttcaaataggtcat 10686710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 35701519 - 35701553
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaa 324  Q
    |||||||||||||||||||| ||||||||||||||    
T  35701519 acataattctcaagttagtcttttaaattttaaaa 35701553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 320
Target Start/End: Original strand, 49650591 - 49650621
Alignment:
Q  290 acataattctcaagttagtcctttaaatttt 320  Q
    |||||||||||||||||||||||||||||||    
T  49650591 acataattctcaagttagtcctttaaatttt 49650621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 44964116 - 44964075
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    ||||||||||||| |||||||| |||||||||||| ||||||    
T  44964116 aattctcaagttattcctttaagttttaaaagtttcaaatag 44964075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 8902843 - 8902883
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    ||||| |||||||||||||||| ||| ||||||||||||||    
T  8902843 aattcccaagttagtcctttaagtttcaaaagttttaaata 8902883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 27351129 - 27351165
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagt 326  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  27351129 acataattctcaagttagtcctttaagtttcaaaagt 27351165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 186644 - 186420
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaa-tttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggtt 128  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  186644 accttattgtttcgatgcttccaaatactccaaagggtcacactgaaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggtt 186545  T
Q  129 gaaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgag 228  Q
    | ||| ||||||||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||||||||||||||| |||||||||||||      
T  186544 ggaaaactgacattaatatcaaaaacagccatcaaagggctccatatgccaatacgttgccaacaaagcatacttttactacacataaagaacaaatggt 186445  T
Q  229 tgttattctctccaaaatcatcaca 253  Q
    || ||| |||||  |||||||||||    
T  186444 tgctatcctctctgaaatcatcaca 186420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 9e-83; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 32577555 - 32577332
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32577555 accttattgtttcgatgcttccaaatactccaaagggtcacactgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaatacattggttg 32577456  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||| ||||||||||||||||| ||||| |||||||||||||||||| ||||| | |||||| |||||||||||||||||||| |||||||||||||  |    
T  32577455 gaaaactgacattaatatcaaagacagccatcaaagggctccataagccaatacgttgccaataaagcatacttttactacacataaagaacaaatggtt 32577356  T
Q  230 gttattctctccaaaatcatcaca 253  Q
      ||| |||||| |||||||||||    
T  32577355 actatcctctccgaaatcatcaca 32577332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 196
Target Start/End: Complemental strand, 5839279 - 5839121
Alignment:
Q  34 tattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaaa 133  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||    ||||||||||||||||||||||||||||||||||||| |||    
T  5839279 tattgtttcgatgcttccaaatactccaaagggtcacactcaaagtttgcttttg----tgatccaggtgttgtaggatagcaaacacattggttggaaa 5839184  T
Q  134 gctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaag 196  Q
    |||||| ||||||||||||| ||| ||||||| |||||||||| ||||| | |||||||||||    
T  5839183 gctgaccttaatatcaaaaagagccatcaaagtgctccataagccaatacgttgccaacaaag 5839121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 32283392 - 32283609
Alignment:
Q  36 ttgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaaagc 135  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  32283392 ttgtttcgatgcttccatatactccagagggtcacactgaaaatttgcttttgctgttgatccaggtgttgtaagatagcaaacacattggttggaaagc 32283491  T
Q  136 tgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagtgttatt 235  Q
    |  ||| ||||||||||||||| ||||||   ||||||||  |  | ||||||||||||| | | ||||||  |||| ||||||||| ||| ||  |||     
T  32283492 ttgcatcaatatcaaaaacagccatcaaaacactccataatccgctctgctgccaacaaatcttgcttttatcacacataaagaacatatgggtactatc 32283591  T
Q  236 ctctccaaaatcatcaca 253  Q
    ||| ||||||||||||||    
T  32283592 ctcaccaaaatcatcaca 32283609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 34686949 - 34686908
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  34686949 aattatcaagttagtcctttaaattttaaaagttttaaatag 34686908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 25737660 - 25737614
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||    
T  25737660 aattctcaagttagtcctttaaatttcaaaagtttcaaatatttcat 25737614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 14871027 - 14871063
Alignment:
Q  301 aagttagtcctttaaattttaaaagttttaaatagtt 337  Q
    |||||||||||||||||||||||||||| ||||||||    
T  14871027 aagttagtcctttaaattttaaaagtttcaaatagtt 14871063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 25730174 - 25730134
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  25730174 aattctcaagttagtcctttaaatttcaaaagtttcaaata 25730134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 8713863 - 8713901
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttt 328  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  8713863 acataattctcaagttagtcctttaagtttcaaaagttt 8713901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 36359982 - 36360028
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    ||||| |||||||||||||||| |||||||||||| |||||| ||||    
T  36359982 aattcccaagttagtcctttaagttttaaaagtttcaaataggtcat 36360028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 25737121 - 25737166
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    |||||||| ||||||||||||||||| ||| |||||||| ||||||    
T  25737121 acataattttcaagttagtcctttaagtttcaaaagtttcaaatag 25737166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 13771922 - 13771878
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    ||||||||| |||||||||||||||| ||| |||||||| |||||    
T  13771922 acataattcccaagttagtcctttaagtttcaaaagtttcaaata 13771878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 30576711 - 30576671
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    ||||| |||||||||||||||| ||| ||||||||||||||    
T  30576711 aattcccaagttagtcctttaagtttcaaaagttttaaata 30576671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 31169536 - 31169496
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    ||||||||| |||||||||||| |||||||||||| |||||    
T  31169536 aattctcaaattagtcctttaagttttaaaagtttcaaata 31169496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 2820 - 3043
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    |||||||||||||||||||||||||||||| | ||||||||  || | |||||| |||| ||||||||||||||||||||||| | ||||||||||||||    
T  2820 accttattgtttcgatgcttccaaatactctagagggtcacattggacatttgcgtttgttgctgatccaggtgttgtaggattgtaaacacattggttg 2919  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||||||||||||||||||||||||||| |||||||||||||||||  ||||| | ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  2920 gaaagctgacattaatatcaaaaacagccatcaaagggctccataaaccaatacgttgccagcaaagcatacttttattacacataaagaacaaatgagt 3019  T
Q  230 gttattctctccaaaatcatcaca 253  Q
      ||| ||| ||||||||||||||    
T  3020 actatcctcaccaaaatcatcaca 3043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 38452317 - 38452537
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaa 132  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||    
T  38452317 ttattgtttcggtgcttccatatactccaaagggtcacactgaaaacttgcttttgctgctggtccaggtgttgtaagataccaaacacattggttggaa 38452416  T
Q  133 agctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagtgtt 232  Q
    ||||  ||| ||||||||||||||| |||||| | ||||||||  || | ||||||||||||| | | ||||||  |||| |||||||||||||  |  |    
T  38452417 agcttgcatcaatatcaaaaacagccatcaaaagactccataatccactctgctgccaacaaatcttgcttttatcacacataaagaacaaatggatact 38452516  T
Q  233 attctctccaaaatcatcaca 253  Q
    || ||| ||||||||||||||    
T  38452517 atcctcaccaaaatcatcaca 38452537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 10213337 - 10213138
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||| |||||||| || |||||    || | ||| ||||| || |||||||| |||||||  |||||||||||||||||||    
T  10213337 accttattgtttcgatgcttccatatactccatagagtcacatcaaatacttgtttttgatgttgatccagatgttgtaaaatagcaaacacattggttg 10213238  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||||||  ||||| |||||||   ||| |||||||||||||||||| ||||  ||| |||||| ||||| |||||||||||| ||||||||||||||||    
T  10213237 gaaagcttgcattagtatcaaaggtagccatcaaagggctccataagccaatccgctaccaacatagcatgcttttactacacataaagaacaaatgagt 10213138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 23770399 - 23770613
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaa 132  Q
    |||||||||| ||||||||| |||||||| |||||||| ||||||| ||| ||||| ||||| |||| |||||||| ||||||||||||| |||||| ||    
T  23770399 ttattgtttctatgcttccatatactccagagggtcacactgaaaacttgtttttgttgctggtccaagtgttgtaagatagcaaacacagtggttggaa 23770498  T
Q  133 agctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagtgtt 232  Q
    | ||  ||| ||||||||||||||| |||||| | ||||||||  || |  |||||||||||| | | ||||||  |||| ||||||||| ||| ||  |    
T  23770499 aacttgcatcaatatcaaaaacagccatcaaaagactccataatccactccgctgccaacaaatcttgcttttatcacacataaagaacatatgtgtact 23770598  T
Q  233 attctctccaaaatc 247  Q
    |||||| ||||||||    
T  23770599 attctcgccaaaatc 23770613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 253
Target Start/End: Original strand, 23797374 - 23797554
Alignment:
Q  73 tgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaaagctgacattaatatcaaaaacagcgatcaaagggctcca 172  Q
    |||||| ||| ||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||  ||| |||||| |||||||  |||||| | |||||    
T  23797374 tgaaaacttgtttttgttgctggtccaggtgttgtaagatagcaaacacattggttggaaagcttgcatcaatatctaaaacagtcatcaaaagactcca 23797473  T
Q  173 taagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagtgttattctctccaaaatcatcaca 253  Q
    |||  || | ||||||||||||| | | ||||||  |||| ||||||||||||| ||  ||| ||| ||||||||| ||||    
T  23797474 taatccactctgctgccaacaaatcttgcttttatcacacataaagaacaaatgggtactatcctcgccaaaatcaacaca 23797554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 30907151 - 30907196
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    |||||||||||||||||||||||||| ||| |||||||| ||||||    
T  30907151 acataattctcaagttagtcctttaagtttcaaaagtttcaaatag 30907196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 15506553 - 15506507
Alignment:
Q  288 taacataattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    ||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  15506553 taacagaattctcaatttagttatttaaattttaaaagttttaaata 15506507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 331
Target Start/End: Complemental strand, 39301919 - 39301889
Alignment:
Q  301 aagttagtcctttaaattttaaaagttttaa 331  Q
    |||||||||||||||||||||||||||||||    
T  39301919 aagttagtcctttaaattttaaaagttttaa 39301889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 31264006 - 31264047
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    |||||||||||||||||||||| ||| |||||||| ||||||    
T  31264006 aattctcaagttagtcctttaagtttcaaaagtttcaaatag 31264047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 34336116 - 34336157
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatag 335  Q
    ||||| |||||||||||||||| ||| |||||||||||||||    
T  34336116 aattcccaagttagtcctttaagtttcaaaagttttaaatag 34336157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 11871793 - 11871753
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    ||||||| |||||||||||||| ||| ||||||||||||||    
T  11871793 aattctcgagttagtcctttaagtttcaaaagttttaaata 11871753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 30907356 - 30907316
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    |||||||||||||||||||||| ||| |||||||| |||||    
T  30907356 aattctcaagttagtcctttaagtttcaaaagtttcaaata 30907316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 43018976 - 43019199
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  43018976 accttattgtttcgatgcttccatatactccaaagggtcacactgaatagttgcttttgttgctggtccaggtgttgtaagatagcaaacacattggttg 43019075  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagt 229  Q
     ||||||  ||  | ||||||||||||| |||||| | ||||||||  || || | || ||||||| | | |||||| ||||| ||||||||||||| ||    
T  43019076 gaaagcttgcagaactatcaaaaacagccatcaaaagactccataatccactacgttgtcaacaaatcttgcttttattacacataaagaacaaatgggt 43019175  T
Q  230 gttattctctccaaaatcatcaca 253  Q
     |||| ||| ||||||||||||||    
T  43019176 attatcctcaccaaaatcatcaca 43019199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 51192499 - 51192627
Alignment:
Q  36 ttgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaaagc 135  Q
    ||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  51192499 ttgtttcgatgcttccatatactccagagggtcacactgaaaacttgcttttgctgttgatccaggtgttgtaagatagcaaacacattggttggaaagc 51192598  T
Q  136 tgacattaatatcaaaaacagcgatcaaa 164  Q
    |  ||| ||||||||||||||| ||||||    
T  51192599 ttgcatcaatatcaaaaacagccatcaaa 51192627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 13443668 - 13443508
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    ||||||||||||||||||||||| |||||||| || ||||| | ||||| ||||||||| ||||||||||| |||| ||  |||| || |||||| |||     
T  13443668 accttattgtttcgatgcttccatatactccatagagtcacacagaaaagttgcttttgttgctgatccagatgttttaaaatagaaatcacattagtta 13443569  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgcca 190  Q
     ||||||  ||||| |||||||  || | || |||||| |||||||| |||| ||||||||    
T  13443568 gaaagcttgcattagtatcaaaggcatctattaaagggttccataagtcaatgtgctgcca 13443508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 21689258 - 21689068
Alignment:
Q  30 accttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttg 129  Q
    |||||||| ||| |||||||||| |||||||| || ||||| | ||||| |||||  || || || |||||||||| || ||||||||||||||||| ||    
T  21689258 accttattattttgatgcttccatatactccagagagtcacaccgaaaacttgctgatgttgttggtccaggtgttataagatagcaaacacattggatg 21689159  T
Q  130 aaaagctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaa 220  Q
     ||| ||  ||| | ||||||||||| | || ||| || |||||||  || |  |||||||||||| ||| || ||| ||||  |||||||    
T  21689158 gaaaacttgcatcagtatcaaaaacaaccattaaaaggttccataacccactccgctgccaacaaatcatgctattattacatataaagaa 21689068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 23484089 - 23483994
Alignment:
Q  29 aaccttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacatt 124  Q
    |||||| || |||| || ||||||||||||||| || ||||| |  || ||||| ||||||||||| ||||| |||| ||| |||| |||||||||    
T  23484089 aaccttgttatttctattcttccaaatactccatagcgtcacaccaaagatttgtttttgctgctggtccagatgttatagaatagaaaacacatt 23483994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 27562 - 27781
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaa 132  Q
    |||||||||| ||||||||| |||||| | |||||||| ||||||| ||||||||| ||||| |||| |||||||| ||||||||||||||||| || ||    
T  27562 ttattgtttcaatgcttccatatactctagagggtcacactgaaaacttgcttttgttgctggtccaagtgttgtaagatagcaaacacattggctggaa 27661  T
Q  133 agctgacattaatatcaaaaacagcgatcaaagggctccataagacaatatgctgccaacaaagcatacttttactacacgtaaagaacaaatgagtgtt 232  Q
    ||||  ||| ||||||||||||||| |||||| | ||||||||  || | ||||||||| ||| | | ||||||  |||| ||||||||||||| ||  |    
T  27662 agcttgcatcaatatcaaaaacagccatcaaaagactccataatccactctgctgccaataaatcttgcttttatcacac-taaagaacaaatgggtact 27760  T
Q  233 attctctccaaaatcatcaca 253  Q
    || ||| ||||||||||||||    
T  27761 atcctcgccaaaatcatcaca 27781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 57914 - 57772
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaa 132  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||| ||||||| ||||| |||||||||||||||||||  ||    
T  57914 ttattgtttcgatgcttccatatactccaaagggtcacactgaaaacttgtttttgctgctggtccaggtattgtaagatagcaaacacattggttagaa 57815  T
Q  133 agctgacattaatatcaaaaacagcgatcaaagggctccataa 175  Q
    ||||  ||| ||||| ||||||| | |||||| | ||||||||    
T  57814 agcttgcatcaatataaaaaacaaccatcaaaagactccataa 57772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 215980 - 215838
Alignment:
Q  33 ttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaacacattggttgaaa 132  Q
    ||||||||||||||||||||  ||||| ||||| |||| ||||||| ||||||||||||||| ||||||||||||| | |||||||||||||||||| ||    
T  215980 ttattgtttcgatgcttccatttactctaaaggatcacactgaaaacttgcttttgctgctggtccaggtgttgtaaggtagcaaacacattggttggaa 215881  T
Q  133 agctgacattaatatcaaaaacagcgatcaaagggctccataa 175  Q
    ||||  ||| || |||||||||||  |||||| | ||||||||    
T  215880 agcttgcatcaaaatcaaaaacagtcatcaaaagactccataa 215838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 20175 - 20084
Alignment:
Q  29 aaccttattgtttcgatgcttccaaatactccaaagggtcactctgaaaatttgcttttgctgctgatccaggtgttgtaggatagcaaaca 120  Q
    |||||| || |||| || ||||||||||||| | || ||||| || || ||||| ||||||||||||||||| |||||||| ||||||||||    
T  20175 aaccttgttatttctattcttccaaatactctatagcgtcacactaaagatttgtttttgctgctgatccagatgttgtagaatagcaaaca 20084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 577 - 531
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||    
T  577 aattctcaagttagtcctttaaatttcaaaagtttcaaataggtcat 531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 39 - 83
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttttaaata 334  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||    
T  39 acataattctcaagttagtccttcaagtttcaaaagttttaaata 83  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 28626 - 28672
Alignment:
Q  294 aattctcaagttagtcctttaaattttaaaagttttaaatagttcat 340  Q
    ||||||||||||||||||||||| || |||||||| |||||| ||||    
T  28626 aattctcaagttagtcctttaaaattcaaaagtttcaaataggtcat 28672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 45309 - 45271
Alignment:
Q  290 acataattctcaagttagtcctttaaattttaaaagttt 328  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  45309 acataattctcaagttagtcttttaagttttaaaagttt 45271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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