View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_55 (Length: 381)

Name: NF0412_low_55
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_55
NF0412_low_55
[»] chr3 (9 HSPs)
chr3 (142-362)||(1341125-1341344)
chr3 (46-80)||(1341030-1341064)
chr3 (46-80)||(19552549-19552583)
chr3 (46-80)||(25722571-25722605)
chr3 (46-80)||(26965609-26965643)
chr3 (46-80)||(32304015-32304049)
chr3 (46-80)||(45095562-45095596)
chr3 (46-80)||(46363121-46363155)
chr3 (98-130)||(2567927-2567959)
[»] chr4 (10 HSPs)
chr4 (194-251)||(46444207-46444264)
chr4 (176-253)||(20668072-20668148)
chr4 (46-80)||(21045161-21045195)
chr4 (46-80)||(30492733-30492767)
chr4 (46-80)||(31941563-31941597)
chr4 (46-80)||(45520570-45520604)
chr4 (46-80)||(45903518-45903552)
chr4 (46-80)||(47321149-47321183)
chr4 (46-80)||(50072286-50072320)
chr4 (98-130)||(55126701-55126733)
[»] chr1 (7 HSPs)
chr1 (171-251)||(41098615-41098694)
chr1 (176-253)||(12253824-12253901)
chr1 (176-233)||(7393394-7393451)
chr1 (46-80)||(11650066-11650100)
chr1 (46-80)||(24041111-24041145)
chr1 (46-80)||(40061007-40061041)
chr1 (46-80)||(50158417-50158451)
[»] chr5 (6 HSPs)
chr5 (171-251)||(6519522-6519601)
chr5 (46-80)||(27810355-27810389)
chr5 (46-80)||(33822613-33822647)
chr5 (46-80)||(34171173-34171207)
chr5 (46-80)||(36660436-36660470)
chr5 (177-253)||(39165526-39165601)
[»] chr2 (7 HSPs)
chr2 (173-253)||(17239721-17239800)
chr2 (197-251)||(11671258-11671311)
chr2 (46-80)||(14378334-14378368)
chr2 (46-130)||(29795300-29795385)
chr2 (46-80)||(33093376-33093410)
chr2 (46-80)||(34225781-34225815)
chr2 (176-253)||(13242326-13242402)
[»] chr8 (6 HSPs)
chr8 (46-81)||(8107270-8107305)
chr8 (46-80)||(8382588-8382622)
chr8 (46-80)||(16208958-16208992)
chr8 (46-80)||(27109931-27109965)
chr8 (46-80)||(34168316-34168350)
chr8 (46-80)||(36915375-36915409)
[»] scaffold0181 (1 HSPs)
scaffold0181 (172-230)||(10328-10386)
[»] chr7 (7 HSPs)
chr7 (46-80)||(3681033-3681067)
chr7 (46-80)||(5723012-5723046)
chr7 (46-80)||(18733462-18733496)
chr7 (46-80)||(22597239-22597273)
chr7 (46-80)||(28044242-28044276)
chr7 (46-80)||(40298856-40298890)
chr7 (184-233)||(45843656-45843705)
[»] chr6 (3 HSPs)
chr6 (46-80)||(3015924-3015958)
chr6 (46-80)||(32258730-32258764)
chr6 (98-130)||(12828847-12828879)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 142 - 362
Target Start/End: Original strand, 1341125 - 1341344
Alignment:
Q  142 aagaggaatactaacttgtgtcaatttgggacatatgttaaggaacttaaattgaaaattttatataaaa-aattatgtcaatttattcttttcagagat 240  Q
    |||||||||||||||||||| |   ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  1341125 aagaggaatactaacttgtgccc--ttggggcatatgttaaggaacttaaattgaaaattttatataaaaaaattatgtcaatttattcattttagagat 1341222  T
Q  241 tcaaaattaatatgatcaccaatgtctaaagatacatgttaaatttaggatcatactaacaagtgttttaagattatttttaataagagatgtctcactt 340  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  1341223 ttaaaattaatatgatcaccaatgtctaaagatacatgttaaatttaggatcatactaacaagtgttttaagattattttcaataagagatgtctgactt 1341322  T
Q  341 attaaacattgatcgatgatgt 362  Q
    ||||| |||||| | |||||||    
T  1341323 attaagcattgacctatgatgt 1341344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 1341030 - 1341064
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  1341030 ttaaagttgtattgaaaatgtaaagtgacattcat 1341064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 19552583 - 19552549
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  19552583 ttaaagttgtattgaaaatgtaaagtgacattcat 19552549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 25722571 - 25722605
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  25722571 ttaaagttgtattgaaaatgtaaagtgacattcat 25722605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 26965609 - 26965643
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  26965609 ttaaagttgtattgaaaatgtaaagtgacattcat 26965643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 32304015 - 32304049
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  32304015 ttaaagttgtattgaaaatgtaaagtgacattcat 32304049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 45095596 - 45095562
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  45095596 ttaaagttgtattgaaaatgtaaagtgacattcat 45095562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 46363121 - 46363155
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  46363121 ttaaagttgtattgaaaatgtaaagtgacattcat 46363155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 2567959 - 2567927
Alignment:
Q  98 ggctaaaatgacattcattttaaaacggatgga 130  Q
    |||||||| ||||||||||||||||||||||||    
T  2567959 ggctaaaacgacattcattttaaaacggatgga 2567927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 46444207 - 46444264
Alignment:
Q  194 tgaaaattttatataaaaaattatgtcaatttattcttttcagagattcaaaattaat 251  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||    
T  46444207 tgaaaattttatctaaaaaattatgtcaatttattcttttaagagattgaaaattaat 46444264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 20668148 - 20668072
Alignment:
Q  176 atgttaaggaacttaaattgaaaattttatataaaaaattatgtcaatttattcttttcagagattcaaaattaatat 253  Q
    ||||||||||||||||| |||||||||||| || |||||| || |||||||||  ||| ||| ||| |||||||||||    
T  20668148 atgttaaggaacttaaaatgaaaattttatctagaaaattgtgccaatttattagttt-agatattaaaaattaatat 20668072  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 21045195 - 21045161
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  21045195 ttaaagttgtattgaaaatgtaaagtgacattcat 21045161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 30492767 - 30492733
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  30492767 ttaaagttgtattgaaaatgtaaagtgacattcat 30492733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 31941597 - 31941563
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  31941597 ttaaagttgtattgaaaatgtaaagtgacattcat 31941563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 45520570 - 45520604
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  45520570 ttaaagttgtattgaaaatgtaaagtgacattcat 45520604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 45903518 - 45903552
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  45903518 ttaaagttgtattgaaaatgtaaagtgacattcat 45903552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 47321183 - 47321149
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  47321183 ttaaagttgtattgaaaatgtaaagtgacattcat 47321149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 50072320 - 50072286
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  50072320 ttaaagttgtattgaaaatgtaaagtgacattcat 50072286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 55126701 - 55126733
Alignment:
Q  98 ggctaaaatgacattcattttaaaacggatgga 130  Q
    |||||||| ||||||||||||||||||||||||    
T  55126701 ggctaaaacgacattcattttaaaacggatgga 55126733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 41098694 - 41098615
Alignment:
Q  171 gacatatgttaaggaacttaaattgaaaattttatataaaaaattatgtcaatttattcttttcagagattcaaaattaat 251  Q
    |||| |||||||||||| |||| |||||||||||| ||||||||| ||||||||||||||||| ||||||| ||| |||||    
T  41098694 gacacatgttaaggaacctaaagtgaaaattttatctaaaaaattgtgtcaatttattctttt-agagattaaaagttaat 41098615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 12253824 - 12253901
Alignment:
Q  176 atgttaaggaacttaaattgaaaattttatataaaaaattatgtcaatttattcttttcagagattcaaaattaatat 253  Q
    ||||||||||| || || |||||||| ||| ||||||||| |||||||||||| |||| | ||||| |||||||||||    
T  12253824 atgttaaggaattttaagtgaaaattatatctaaaaaattgtgtcaatttattttttttaaagattaaaaattaatat 12253901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 7393451 - 7393394
Alignment:
Q  176 atgttaaggaacttaaattgaaaattttatataaaaaattatgtcaatttattctttt 233  Q
    |||||||  |||||||| | |||||||||| ||||||||| |||||||||||||||||    
T  7393451 atgttaaaaaacttaaagtaaaaattttatttaaaaaattgtgtcaatttattctttt 7393394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 11650100 - 11650066
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  11650100 ttaaagttgtattgaaaatgtaaagtgacattcat 11650066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 24041111 - 24041145
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  24041111 ttaaagttgtattgaaaatgtaaagtgacattcat 24041145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 40061007 - 40061041
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  40061007 ttaaagttgtattgaaaatgtaaagtgacattcat 40061041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 50158417 - 50158451
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  50158417 ttaaagttgtattgaaaatgtaaagtgacattcat 50158451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 6519601 - 6519522
Alignment:
Q  171 gacatatgttaaggaacttaaattgaaaattttatataaaaaattatgtcaatttattcttttcagagattcaaaattaat 251  Q
    ||||| |||||| |||| |||| || ||||||||| ||||||||| ||||||||||||||||| ||||||| |||||||||    
T  6519601 gacatgtgttaaagaacctaaagtggaaattttatctaaaaaattgtgtcaatttattctttt-agagattaaaaattaat 6519522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 27810389 - 27810355
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  27810389 ttaaagttgtattgaaaatgtaaagtgacattcat 27810355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 33822613 - 33822647
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  33822613 ttaaagttgtattgaaaatgtaaagtgacattcat 33822647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 34171207 - 34171173
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  34171207 ttaaagttgtattgaaaatgtaaagtgacattcat 34171173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 36660470 - 36660436
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  36660470 ttaaagttgtattgaaaatgtaaagtgacattcat 36660436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 39165601 - 39165526
Alignment:
Q  177 tgttaaggaacttaaattgaaaattttatataaaaaattatgtcaatttattcttttcagagattcaaaattaatat 253  Q
    ||||||| |||||||| |  ||||||||| ||||||||||||| |||| ||| |||| | ||||| |||||||||||    
T  39165601 tgttaagaaacttaaagtagaaattttatctaaaaaattatgttaattcatt-tttttaaagattgaaaattaatat 39165526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 17239800 - 17239721
Alignment:
Q  173 catatgttaaggaacttaaattgaaaattttatataaaaaattatgtcaatttattcttttcagagattcaaaattaatat 253  Q
    ||||||||||||||  |||| || ||||| | | ||  ||||||||||||||||||||||| ||||||| |||||||||||    
T  17239800 catatgttaaggaatctaaagtggaaattctgtctatgaaattatgtcaatttattctttt-agagattgaaaattaatat 17239721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 11671311 - 11671258
Alignment:
Q  197 aaattttatataaaaaattatgtcaatttattcttttcagagattcaaaattaat 251  Q
    ||||||||| |||||||||||| ||||||||| |||| ||||||| |||||||||    
T  11671311 aaattttatttaaaaaattatgacaatttatt-tttttagagattgaaaattaat 11671258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 14378334 - 14378368
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  14378334 ttaaagttgtattgaaaatgtaaagtgacattcat 14378368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 29795300 - 29795385
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcata--gaaacaaannnnnnnnggctaaaatgacattcattttaaaacggatgga 130  Q
    |||||||||||||| ||||| ||||||||||||||   ||||||||        ||||||| |||||||||||||||||||||||||    
T  29795300 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaaatattttt-ggctaaagtgacattcattttaaaacggatgga 29795385  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 33093410 - 33093376
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  33093410 ttaaagttgtattgaaaatgtaaagtgacattcat 33093376  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 34225815 - 34225781
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  34225815 ttaaagttgtattgaaaatgtaaagtgacattcat 34225781  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 13242402 - 13242326
Alignment:
Q  176 atgttaaggaacttaaattgaaaattttatataaaaaattatgtcaatttattcttttcagagattcaaaattaatat 253  Q
    ||||||||||||||| ||| |||||||| | | ||||||  ||||| |||||| |||| ||||||| |||||||||||    
T  13242402 atgttaaggaacttagattaaaaattttgtttgaaaaatggtgtcactttattgtttt-agagattgaaaattaatat 13242326  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 8107270 - 8107305
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcata 81  Q
    |||||||||||||||||||| |||||||||||||||    
T  8107270 ttaaagttgtattgaaaatgtaaagtgacattcata 8107305  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 8382588 - 8382622
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  8382588 ttaaagttgtattgaaaatgtaaagtgacattcat 8382622  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 16208992 - 16208958
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  16208992 ttaaagttgtattgaaaatgtaaagtgacattcat 16208958  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 27109931 - 27109965
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||| ||||||||||||||||||||    
T  27109931 ttaaagttgtattggaaatggaaagtgacattcat 27109965  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 34168316 - 34168350
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  34168316 ttaaagttgtattgaaaatgtaaagtgacattcat 34168350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 36915409 - 36915375
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  36915409 ttaaagttgtattgaaaatgtaaagtgacattcat 36915375  T

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Target: scaffold0181 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 10386 - 10328
Alignment:
Q  172 acatatgttaaggaacttaaattgaaaattttatataaaaaattatgtcaatttattct 230  Q
    ||||||||||||||||||||| ||||| |||| | || |||||| ||| ||||||||||    
T  10386 acatatgttaaggaacttaaagtgaaacttttgtgtagaaaattgtgtaaatttattct 10328  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 3681033 - 3681067
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  3681033 ttaaagttgtattgaaaatgtaaagtgacattcat 3681067  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 5723046 - 5723012
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  5723046 ttaaagttgtattgaaaatgtaaagtgacattcat 5723012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 18733496 - 18733462
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  18733496 ttaaagttgtattgaaaatgtaaagtgacattcat 18733462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 22597273 - 22597239
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  22597273 ttaaagttgtattgaaaatgtaaagtgacattcat 22597239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 28044242 - 28044276
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  28044242 ttaaagttgtattgaaaatgtaaagtgacattcat 28044276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 40298890 - 40298856
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  40298890 ttaaagttgtattgaaaatgtaaagtgacattcat 40298856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 45843705 - 45843656
Alignment:
Q  184 gaacttaaattgaaaattttatataaaaaattatgtcaatttattctttt 233  Q
    |||| |||| |||||||||||| ||||||||| |||||||||||| ||||    
T  45843705 gaacctaaagtgaaaattttatctaaaaaattgtgtcaatttattatttt 45843656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 3015958 - 3015924
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  3015958 ttaaagttgtattgaaaatgtaaagtgacattcat 3015924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 32258764 - 32258730
Alignment:
Q  46 ttaaagttgtattgaaaatggaaagtgacattcat 80  Q
    |||||||||||||||||||| ||||||||||||||    
T  32258764 ttaaagttgtattgaaaatgtaaagtgacattcat 32258730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 12828847 - 12828879
Alignment:
Q  98 ggctaaaatgacattcattttaaaacggatgga 130  Q
    ||||||||||||||||||||| |||||||||||    
T  12828847 ggctaaaatgacattcattttgaaacggatgga 12828879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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