View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_56 (Length: 380)
Name: NF0412_low_56
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 61 - 370
Target Start/End: Original strand, 2267354 - 2267663
Alignment:
| Q |
61 |
ttacattaattcatccctcatacatgaaaatatttcataaatgattgaagacatcgtttataattaaagatcaatactaatttagactctaaaacagaaa |
160 |
Q |
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||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2267354 |
ttacatttattcatcccttatacatgaaagtatttcataaatgattgaagacatcgtttataattaaagatcaatactaatttagactctaaaacagaag |
2267453 |
T |
|
| Q |
161 |
aatccgtgaacaaagtgtcacctaatcagagaggcgtgatatatgtgatatctcttcatgtgctggtatacgagttacaattgtgacaccaggagataat |
260 |
Q |
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| T |
2267454 |
aatccgtgaacaaagtgtcacctaatcagagaggcttgatatatgtgatatctcttcatgtgctggtatacgagttacagttgtgacaccaggagacaat |
2267553 |
T |
|
| Q |
261 |
gcattgactgtcatagtagttgattggaaccgaaacacgaatctgtaattctattcagtaagaagagactgaatccaaattatttcacttgttctagtgg |
360 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2267554 |
gcattgactgtcatagtagttgattggaactgaaacacgaatctgtaattctattcagtaagaagagactgaatccaaattatttcacttgttccagtgg |
2267653 |
T |
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| Q |
361 |
ctagtctctg |
370 |
Q |
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|||||||||| |
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| T |
2267654 |
ctagtctctg |
2267663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 240 - 364
Target Start/End: Complemental strand, 650638 - 650519
Alignment:
| Q |
240 |
attgtgacaccaggagataatgcattgactgtcatagtagttgattggaaccgaaacacgaatctgtaattctattcagtaagaagagactgaatccaaa |
339 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
650638 |
attgtgacacgaggagacaatgcattgactgtcatagtagttgattggaactgaaacacgaacctgta-----attcagtaagaagagactgaatccaaa |
650544 |
T |
|
| Q |
340 |
ttatttcacttgttctagtggctag |
364 |
Q |
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| T |
650543 |
ttatttcacttgttcttatggctag |
650519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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