View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_57 (Length: 380)
Name: NF0412_low_57
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 29 - 368
Target Start/End: Complemental strand, 32632031 - 32631692
Alignment:
| Q |
29 |
acaagggactcttcaagatatacttatcatttttccatttctaatggttacgtcttaatcataattcttgctatttataaggaaggccacttcatacatt |
128 |
Q |
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| T |
32632031 |
acaagggactcttcaagatatacttatcatttttccatttctaatggttacgtcttaatcataattcttgctatttataaggaaggccacttcatacatt |
32631932 |
T |
|
| Q |
129 |
tcacagcatctctaaacaataagctataacatttttcatattttcttgaatacaaagaaatggaaaaaataggtgttgctaataaaatgaataaggcaag |
228 |
Q |
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| T |
32631931 |
tcacagcatctctaaacaataagctataacatttttcatattttcttgaatacaaagaaatggaaaaaataggtgttgctaataaaatgaataaggcaag |
32631832 |
T |
|
| Q |
229 |
gccttatgtgttaacagtggcacttcaatttgggtttgcaggagcatacatattctccatggccagtttcaacatgggaatgaatcgttttgtgttcatt |
328 |
Q |
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| T |
32631831 |
gccttatgtgttaacagtggcacttcaatttgggtttgcaggagcatacatattctccatggccagtttcaacatgggaatgaatcgttttgtgttcatt |
32631732 |
T |
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| Q |
329 |
gtttatcgtaatgtcattgctgcaattgcccttgctccct |
368 |
Q |
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| T |
32631731 |
gtttatcgtaatgtcattgctgcaattgcccttgctccct |
32631692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 52960610 - 52960542
Alignment:
| Q |
33 |
gggactcttcaagatatacttatcatttttccatttctaatgg-ttacgtcttaatcataattcttgct |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||| |
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| T |
52960610 |
gggactcttcaagatatacttatcattttcccatttctaatggattacgtcttaatcaaaattcgtgct |
52960542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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