View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_59 (Length: 378)
Name: NF0412_low_59
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 106 - 324
Target Start/End: Original strand, 35368511 - 35368725
Alignment:
| Q |
106 |
ctgcatgtgtactggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaa |
205 |
Q |
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| T |
35368511 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaa |
35368610 |
T |
|
| Q |
206 |
aatagaatgtttgagtggatgcatataatggatgtatagaacatataaagtggaacacgcgacaagttgattcgattcgattcattttgctatgaatatt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
35368611 |
aatagaatgtttgagtggatgcatataatggatgtatagaacatataaagtggaacacgcgacaagttgattcgattc-at---ttttgctatgaatatt |
35368706 |
T |
|
| Q |
306 |
tattggttagtcaaaggcc |
324 |
Q |
| |
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||||||||| ||||||||| |
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| T |
35368707 |
tattggttattcaaaggcc |
35368725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 35374596 - 35374784
Alignment:
| Q |
30 |
gttctaacacaagcaaaccacacaacacaagaagtgtgaatgtttgcttaaggtgtgagcatctatttcttgatgtctgcatgtgtactggaatcttgtg |
129 |
Q |
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| T |
35374596 |
gttctaacacaagcaaaccacacaa-----gaagtgtgtatgtttgcttaaggtgtgagcatac----ctcagtgcctgcatgtgtaatagaatcttgtg |
35374686 |
T |
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| Q |
130 |
cagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgca |
228 |
Q |
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| T |
35374687 |
cagccacattggcaattgtctttaca-ttcagcatacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgca |
35374784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 54 - 257
Target Start/End: Original strand, 35355987 - 35356183
Alignment:
| Q |
54 |
acacaagaagtgtgaatgtttgcttaaggtgtgagcatctatttcttgatgtctgcatgtgtactggaatcttgtgcagccacattcgcaattgtcttta |
153 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| || || ||||||||||| | |||||||||||||||||||| ||||||||||||| |
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| T |
35355987 |
acacaagaagtgtgtatgtttgcttaaggtgtgagcatac----ctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaattgtcttta |
35356082 |
T |
|
| Q |
154 |
ca-attcagcatacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatataatggatgtatagaacatata |
252 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
35356083 |
cacattcagcttacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgc--ttaatggatg--tagaacatata |
35356178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 35343311 - 35343134
Alignment:
| Q |
54 |
acacaagaagtgtgaatgtttgcttaaggtgtgagcatctatttcttgatgtctgcatgtgtactggaatcttgtgcagccacattcgcaattgtcttta |
153 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||| | | || || ||||||||||| ||| || ||| ||||||||||| ||||||||||||| |
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| T |
35343311 |
acacaagaagtgtgtatgtttacttaaggtgtgagctt----tgctacgtgcctgcatgtgtaatggcatattgggcagccacattggcaattgtcttta |
35343216 |
T |
|
| Q |
154 |
caattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatataatg |
235 |
Q |
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| T |
35343215 |
caattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatataatg |
35343134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 60 - 236
Target Start/End: Original strand, 35335850 - 35336021
Alignment:
| Q |
60 |
gaagtgtgaatgtttgcttaaggtgtgagcatctatttcttgatgtctgcatgtgtactggaatcttgtgcagccacattcgcaattgtctttacaattc |
159 |
Q |
| |
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|||||||| |||||||||||||||||||||| || | || ||||||||||| ||| |||||||| ||||||||| ||||||||||||||||||| |
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| T |
35335850 |
gaagtgtgtgtgtttgcttaaggtgtgagcatgg----ctcggtgcctgcatgtgtaatggcatcttgtgtagccacattggcaattgtctttacaattc |
35335945 |
T |
|
| Q |
160 |
agcatacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatataatgg |
236 |
Q |
| |
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| | ||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35335946 |
aacttacacgttggaaa-agaagcaaagaatcaagaatattgacaaaataaaatgtttgagtggatgcatataatgg |
35336021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 35346375 - 35346532
Alignment:
| Q |
70 |
tgtttgcttaaggtgtgagcatctatttcttgatgtctgcatgtgtactggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacg |
169 |
Q |
| |
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|||||||||||||||||||||| || |||| ||||||||| | ||| |||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
35346375 |
tgtttgcttaaggtgtgagcatgg----ctcgatgcctgcatgtgcaatgggatcttgtgcagccacattggcaattgtctttacaattcagcttacacg |
35346470 |
T |
|
| Q |
170 |
ttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatataat |
234 |
Q |
| |
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||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
35346471 |
ttggaaaatgcagcatagaatcaagaata---accaaatagaatgtttgagtggatgcatataat |
35346532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 35351474 - 35351605
Alignment:
| Q |
108 |
gcatgtgtactggaatcttgtgcagccacattcgcaattgtctttacaattcagcatacacgttggaaatagcagc-----taagaatcaagaatattga |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| |||| || ||||||| |||||||||| |||||| |||||||||||||||||| |
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|
| T |
35351474 |
gcatgtgtaatggaatcttgtgcagccacattggcaattgtttttataagtcagcatgcacgttggaagaagcagcaaattaaagaatcaagaatattga |
35351573 |
T |
|
| Q |
203 |
caaaatagaatgtttgagtggatgcatataat |
234 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
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| T |
35351574 |
aaaaatcgaatgtttgagtggatgcatataat |
35351605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 35348009 - 35347807
Alignment:
| Q |
29 |
agttctaacacaagcaaaccacacaacacaagaagtgtgaatgtttgcttaaggtgtgagcatctatttcttgatgtctgcatgtgta--ctggaatctt |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||| || || || ||||||||||| ||| |||| |
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| T |
35348009 |
agttctaacacaagcaaaccacacaa-----gaagtgtgtaagtttgcttaaggtatgagc----atggctacgtgcctgcatgtgtaatatggggtctt |
35347919 |
T |
|
| Q |
127 |
gtgcagccacattcgcaattgtctttacaattcagc----atacacgt-tggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagt |
221 |
Q |
| |
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||||||||||||| |||||||||| ||||||||||| |||||||| |||||| || ||| |||| |||||||||||||||||||||||||||||||| |
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| T |
35347918 |
gtgcagccacattggcaattgtctctacaattcagcatatatacacgtatggaaa-agaagcaaagactcaagaatattgacaaaatagaatgtttgagt |
35347820 |
T |
|
| Q |
222 |
ggatgcatataat |
234 |
Q |
| |
|
||||||||||||| |
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|
| T |
35347819 |
ggatgcatataat |
35347807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 35364651 - 35364830
Alignment:
| Q |
54 |
acacaagaagtgtgaatgtttgcttaaggtgtgagcatctatttcttgatgtctgcatgtgtactggaatcttgtgcagccacattcgcaattgtcttta |
153 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| | |||| | |||||||||| ||| |||||||||||||||||| ||| ||||||||| |
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| T |
35364651 |
acacaagaagtgtgtatgtttgcttaaggtgtgagcatggctc-cttgct---tgcatgtgtaatgggatcttgtgcagccacattggcatttgtcttta |
35364746 |
T |
|
| Q |
154 |
caattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaa-tgtttgagtggatgcatataatgg |
236 |
Q |
| |
|
||||||||| |||| ||||| || || || |||||||||||||| || |||||| || | ||| |||||||||||||||||| |
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|
| T |
35364747 |
caattcagcgtacatgttgggaaaagaagaaaagaatcaagaataatgggaaaatataatttttttagtggatgcatataatgg |
35364830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 35341077 - 35341188
Alignment:
| Q |
122 |
atcttgtgcagccacattcgcaa--ttgtctttacaattcagcatacacgttggaaatagcagctaagaatcaag----aatattgacaaaatagaatgt |
215 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||| |
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|
| T |
35341077 |
atcttgtgcagccacattggcaaaattgtctttacaattcagcatacacgttggaagaagcagcatagattcaagaattaatattgacaaaatagaatgt |
35341176 |
T |
|
| Q |
216 |
ttgagtggatgc |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35341177 |
ttgagtggatgc |
35341188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 216
Target Start/End: Original strand, 35371828 - 35371983
Alignment:
| Q |
54 |
acacaagaagtgtgaatgtttgcttaaggtgtgagcatctatttcttgatgtctgcatgtgtactggaatcttgtgcagccacattcgcaattgtcttta |
153 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| | |||| | | |||||||| ||| |||||||||||| |||| ||| || |||||| |
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| T |
35371828 |
acacaagaagtgtgtatgtttgcttaaggtgtgagcatggctc-cttgct---tccatgtgtaatgggatcttgtgcagcatcattggcatttctcttta |
35371923 |
T |
|
| Q |
154 |
caattcagcatacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtt |
216 |
Q |
| |
|
||||||||| ||||||||| || |||| | |||||||||||| |||| |||||||||||| |
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|
| T |
35371924 |
caattcagcttacacgttgataaaagcaacaaagaatcaagaa---tgactaaatagaatgtt |
35371983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 35372014 - 35372046
Alignment:
| Q |
284 |
gattcattttgctatgaatatttattggttagt |
316 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
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|
| T |
35372014 |
gattcattttgctatgaatttttattggttagt |
35372046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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