View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_60 (Length: 378)
Name: NF0412_low_60
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 30941819 - 30941977
Alignment:
| Q |
21 |
acatcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagac |
120 |
Q |
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| T |
30941819 |
acatcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagac |
30941918 |
T |
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| Q |
121 |
caccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttactta |
179 |
Q |
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| T |
30941919 |
caccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttactta |
30941977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 196 - 349
Target Start/End: Original strand, 30942095 - 30942248
Alignment:
| Q |
196 |
attggaagattaagggctgcttatgaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagag |
295 |
Q |
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| T |
30942095 |
attggaagattaagggctgcttatgaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagag |
30942194 |
T |
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| Q |
296 |
agtctcaagctaaggctagaggtataccttataagaagaaaaagaaaagcacaa |
349 |
Q |
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| T |
30942195 |
agtctcaagctaaggctagaggtataccttataagaagaaaaagaaaagcacaa |
30942248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 37974937 - 37974981
Alignment:
| Q |
60 |
tacgaatcacaaaagagaagagattggaacacttttggtcaatac |
104 |
Q |
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| T |
37974937 |
tacgagtcacaaaagagacgtgattggaacacttttggtcaatac |
37974981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 341
Target Start/End: Complemental strand, 32002151 - 32002006
Alignment:
| Q |
196 |
attggaagattaagggctgcttatgaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagag |
295 |
Q |
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|||||||||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| | |||| ||| | ||| | |||| |
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| T |
32002151 |
attggaagattaagagctgcttatgaagaaaatggtggattacctgaaactaatccttttgctagtggttccataagaatctatcttcgtgaggtgagag |
32002052 |
T |
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| Q |
296 |
agtctcaagctaaggctagaggtataccttataagaagaaaaagaa |
341 |
Q |
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| T |
32002051 |
attctcaagctaaggctagaggaattccttacaagaagaaaaagaa |
32002006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 39556357 - 39556472
Alignment:
| Q |
48 |
acacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaata |
147 |
Q |
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|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||| || |||||| |
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| T |
39556357 |
acacttagccgctatgaatctcaaaagagaagagattggaacacttttggtcaatacttaaacaacctaagaccacccgttccactttctcactgcaatt |
39556456 |
T |
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| Q |
148 |
gcaaccatgttttgga |
163 |
Q |
| |
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| T |
39556457 |
ccaaccatgtgttgga |
39556472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 349
Target Start/End: Original strand, 39556606 - 39556759
Alignment:
| Q |
196 |
attggaagattaagggctgcttatgaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagag |
295 |
Q |
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||||| || ||||||||||||||||| ||||| || || |||| || ||||||||||| || || ||| | ||||| || || ||||| ||| |||| | |
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| T |
39556606 |
attgggaggttaagggctgcttatgaggaaaacggcggaactccagagactaatcctttcgcgagcggtgctattcgcgtttatcttagagaggttaggg |
39556705 |
T |
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| Q |
296 |
agtctcaagctaaggctagaggtataccttataagaagaaaaagaaaagcacaa |
349 |
Q |
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||| ||||||||||||||| ||||| ||||| |||||||||||||| ||||||| |
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| T |
39556706 |
agtgtcaagctaaggctaggggtatcccttacaagaagaaaaagaagagcacaa |
39556759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 32002397 - 32002342
Alignment:
| Q |
51 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatactt |
106 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
32002397 |
cttagtcgatacgagtcacaaaagagaagagattggaacacttttggacaatactt |
32002342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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