View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_62 (Length: 375)

Name: NF0412_low_62
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_62
NF0412_low_62
[»] chr1 (3 HSPs)
chr1 (30-244)||(24430200-24430414)
chr1 (32-244)||(16504237-16504449)
chr1 (33-240)||(29992191-29992397)
[»] chr5 (2 HSPs)
chr5 (32-240)||(17411741-17411949)
chr5 (34-244)||(40124239-40124449)
[»] chr3 (1 HSPs)
chr3 (34-244)||(53015763-53015973)
[»] chr7 (1 HSPs)
chr7 (34-244)||(12559091-12559301)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 24430200 - 24430414
Alignment:
Q  30 gacgataaagagttgcatcgtcaagtaaggtaccatcttgaggagaaaatcgaacatttggttcaagaggagtgtgctcaattttacaatcagtgagacc 129  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24430200 gacgatatagagttgcatcgtcaagtaaggtaccatcttgaggagaaaatcgaacatttggttcaagaggagtgtgctcaattttacaatcagtgagacc 24430299  T
Q  130 tgctcgagagacaagatcagaagcatacttagcttgtgagagaaataaaccatcaatggaagataaaacttcaagccccaaaaaataacttaacggtcca 229  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24430300 tgctcgagagacaagatcagaagcatacttagcctttgagagaaataaaccatcaatggaagataaaacttcaagccccaaaaaataacttaatggtcca 24430399  T
Q  230 agatccttcatctca 244  Q
    |||||||||||||||    
T  24430400 agatccttcatctca 24430414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 32 - 244
Target Start/End: Complemental strand, 16504449 - 16504237
Alignment:
Q  32 cgataaagagttgcatcgtcaagtaaggtaccatcttgaggagaaaatcgaacatttggttcaagaggagtgtgctcaattttacaatcagtgagacctg 131  Q
    ||||||||||| ||||| | |||||| |||||||||||||||| ||||| ||| |  | ||||||||||||||| || |||||||||||| ||| |||||    
T  16504449 cgataaagagtagcatcattaagtaaagtaccatcttgaggagtaaatcaaacgtcggattcaagaggagtgtgttcgattttacaatcaatgaaacctg 16504350  T
Q  132 ctcgagagacaagatcagaagcatacttagcttgtgagagaaataaaccatcaatggaagataaaacttcaagccccaaaaaataacttaacggtccaag 231  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||||| | |||||||| ||||||||||| | |||||||||||| ||||||||    
T  16504349 ctcgagagacaagatcagaagcatacttagcctgtgagaggaacaaaccatcactcgaagataatacttcaagccctagaaaataacttaatggtccaag 16504250  T
Q  232 atccttcatctca 244  Q
    |||||||||||||    
T  16504249 atccttcatctca 16504237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 33 - 240
Target Start/End: Complemental strand, 29992397 - 29992191
Alignment:
Q  33 gataaagagttgcatcgtcaagtaaggtaccatcttgaggagaaaatcgaacatttggttcaagaggagtgtgctcaattttacaatcagtgagacctgc 132  Q
    |||||||||| | ||| | |||||| || ||||||| ||||| ||||||||| |||| ||||||| ||||||| || ||||||||||||||||||||| |    
T  29992397 gataaagagtagtatcattaagtaaagtgccatcttaaggagtaaatcgaacgtttgattcaagaagagtgtgttcgattttacaatcagtgagaccttc 29992298  T
Q  133 tcgagagacaagatcagaagcatacttagcttgtgagagaaataaaccatcaatggaagataaaacttcaagccccaaaaaataacttaacggtccaaga 232  Q
    |||||||||||||||||||||||||||||| ||||||||||| || |||||| | |||||||| ||||||| ||||||||| |||||||| |||||||||    
T  29992297 tcgagagacaagatcagaagcatacttagcctgtgagagaaacaagccatcactcgaagataatacttcaa-ccccaaaaagtaacttaatggtccaaga 29992199  T
Q  233 tccttcat 240  Q
    ||||||||    
T  29992198 tccttcat 29992191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 17411741 - 17411949
Alignment:
Q  32 cgataaagagttgcatcgtcaagtaaggtaccatcttgaggagaaaatcgaacatttggttcaagaggagtgtgctcaattttacaatcagtgagacctg 131  Q
    ||||||||||| ||||| | |||||| |||||||||||| ||| ||||| |||||| ||||||||||||||||| || |||||||||| |||||||||||    
T  17411741 cgataaagagtagcatcattaagtaaagtaccatcttgaagagtaaatcaaacattgggttcaagaggagtgtgttcgattttacaattagtgagacctg 17411840  T
Q  132 ctcgagagacaagatcagaagcatacttagcttgtgagagaaataaaccatcaatggaagataaaacttcaagccccaaaaaataacttaacggtccaag 231  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| |||||| | |||||||| ||||||||||||||||| |||||||| ||||||||    
T  17411841 ctcgagagacaagatcagaagcatacttagcctatgagagaaataagccatcactcgaagataatacttcaagccccaaaaagtaacttaatggtccaag 17411940  T
Q  232 atccttcat 240  Q
    |||||||||    
T  17411941 atccttcat 17411949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 40124239 - 40124449
Alignment:
Q  34 ataaagagttgcatcgtcaagtaaggtaccatcttgaggagaaaatcgaacatttggttcaagaggagtgtgctcaattttacaatcagtgagacctgct 133  Q
    ||||||||| ||||| || ||||| |||||||||||||||| |||| |||  || ||||||||| ||||||  || ||||||||||| ||||||||||||    
T  40124239 ataaagagtagcatcatcgagtaaagtaccatcttgaggagtaaattgaatgttgggttcaagacgagtgtattcgattttacaatctgtgagacctgct 40124338  T
Q  134 cgagagacaagatcagaagcatacttagcttgtgagagaaataaaccatcaatggaagataaaacttcaagccccaaaaaataacttaacggtccaagat 233  Q
     |||||||||||||||||||||||||||| ||||||||||| ||  ||||| | ||||||||  |||||||||||||||| |||||||| ||| ||||||    
T  40124339 tgagagacaagatcagaagcatacttagcctgtgagagaaacaagtcatcattcgaagataatgcttcaagccccaaaaagtaacttaatggttcaagat 40124438  T
Q  234 ccttcatctca 244  Q
    |||||||||||    
T  40124439 ccttcatctca 40124449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 53015763 - 53015973
Alignment:
Q  34 ataaagagttgcatcgtcaagtaaggtaccatcttgaggagaaaatcgaacatttggttcaagaggagtgtgctcaattttacaatcagtgagacctgct 133  Q
    ||||||||| ||||| | |||||| |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| |||| |||||||||||    
T  53015763 ataaagagtagcatcattaagtaaagtaccatcttgaggagtaaatcgaacgtttggttcaagaggagtgtgttcaattttactatcactgagacctgct 53015862  T
Q  134 cgagagacaagatcagaagcatacttagcttgtgagagaaataaaccatcaatggaagataaaacttcaagccccaaaaaataacttaacggtccaagat 233  Q
    ||||||||||||| ||||||||||||||| ||||||||||| || |||||| | |||||| | ||||||||||| | ||| |||||||| |||| |||||    
T  53015863 cgagagacaagataagaagcatacttagcctgtgagagaaacaagccatcactcgaagatgatacttcaagccctagaaagtaacttaatggtcaaagat 53015962  T
Q  234 ccttcatctca 244  Q
    |||||||||||    
T  53015963 ccttcatctca 53015973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 12559301 - 12559091
Alignment:
Q  34 ataaagagttgcatcgtcaagtaaggtaccatcttgaggagaaaatcgaacatttggttcaagaggagtgtgctcaattttacaatcagtgagacctgct 133  Q
    ||||||||| ||||| | |||||| ||| || ||||||||| ||||||||||||||||| |||||||||||| || ||||||  |||| |||||||||||    
T  12559301 ataaagagtagcatcattaagtaaagtatcaccttgaggagtaaatcgaacatttggtttaagaggagtgtgttcgattttagtatcattgagacctgct 12559202  T
Q  134 cgagagacaagatcagaagcatacttagcttgtgagagaaataaaccatcaatggaagataaaacttcaagccccaaaaaataacttaacggtccaagat 233  Q
     |||||||||||||||||||||||||||| ||||||||||| ||  ||| | | |||||||| ||||||||||| | ||| ||||| || ||||||||||    
T  12559201 agagagacaagatcagaagcatacttagcctgtgagagaaacaagtcattactcgaagataatacttcaagccctataaagtaactaaatggtccaagat 12559102  T
Q  234 ccttcatctca 244  Q
    |||||||||||    
T  12559101 ccttcatctca 12559091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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