View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_63 (Length: 375)

Name: NF0412_low_63
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_63
NF0412_low_63
[»] chr4 (3 HSPs)
chr4 (283-366)||(42635691-42635774)
chr4 (150-225)||(42635832-42635907)
chr4 (35-82)||(42635975-42636022)
[»] chr2 (1 HSPs)
chr2 (283-337)||(44095799-44095853)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 42635774 - 42635691
Alignment:
Q  283 catgctaggaataggaaataactcactgacaaaaatgctagagaaactaaagtaatttcagctcttggcattatatagtataat 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42635774 catgctaggaataggaaataactcactgacaaaaatgctagagaaactaaagtaatttcagctcttggcattatatagtataat 42635691  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 42635907 - 42635832
Alignment:
Q  150 acaaaaatggaaaatcgtgctatgcaacaaactaacaaaagcctgtgaagaatattcacttacaagcagtgcatcc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42635907 acaaaaatggaaaatcgtgctatgcaacaaactaacaaaagcctgtgaagaatattcacttacaagcagtgcatcc 42635832  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 42636022 - 42635975
Alignment:
Q  35 gtagtgatgtttcacctcaaacaccttcatttcttaagattctctgaa 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42636022 gtagtgatgtttcacctcaaacaccttcatttcttaagattctctgaa 42635975  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 44095799 - 44095853
Alignment:
Q  283 catgctaggaataggaaataactcactgacaaaaatgctagagaaactaaagtaa 337  Q
    ||||||||||||||||||||||   ||||||||||| ||||||||||||||||||    
T  44095799 catgctaggaataggaaataaccttctgacaaaaattctagagaaactaaagtaa 44095853  T

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