View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_65 (Length: 375)
Name: NF0412_low_65
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_65 |
 | |
|
| [»] scaffold0188 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 361
Target Start/End: Complemental strand, 13636963 - 13636631
Alignment:
| Q |
29 |
aaacatgactcggatctcttaagcaaggtctcaggttcgtgtcttgtgaaccgnnnnnnnnnnctatggtccagaggggacaccccactagtttaatggc |
128 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
13636963 |
aaacatgactcagatctcttaagcaaggtctcaggttcgtgtcttgtgaaccaaaaaaaaaaactatggtccggagggggcaccccactagtttaatggc |
13636864 |
T |
|
| Q |
129 |
ccttattcatcaacaaaagcctgggtatacctagtatcaataacatagttacaaacagaaaaacatgcaatatcttgagcaatttaaaaacttatatcac |
228 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13636863 |
ccctattcatcaacaaaagcctgggtatacctcgtatcaataacatagttacaaacagaaaaacatgcaatatcttgagcaatttaaaaacttatatcac |
13636764 |
T |
|
| Q |
229 |
atctttcttggatgtattcaatacaaaattagcatcaaagaaagaaagaaataaagggtaagtnnnnnnntacctgttggggagcattataaccagaagg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13636763 |
atctttcttggatgtattcaatacaaaattagcatcaaagaaagaaagaaataaagggtaagtagaaaaatacctgttggggagcattataaccagaagg |
13636664 |
T |
|
| Q |
329 |
aacatcaaaaacatcactatcaagtggcatatc |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
13636663 |
aacatcaaaaacatcactatcaagtggcatatc |
13636631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 50981616 - 50981676
Alignment:
| Q |
300 |
acctgttggggagcattataaccagaaggaacatcaaaaacatcactatcaagtggcatat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
50981616 |
acctgttggggagcattataaccagaaggaacagcaaaaacatcactatcaagtgacatat |
50981676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 8365 - 8303
Alignment:
| Q |
299 |
tacctgttggggagcattataaccagaaggaacatcaaaaacatcactatcaagtggcatatc |
361 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||||||| |
|
|
| T |
8365 |
tacctgttgaggagcattataaccaggtggaaccctaaaaacatcgctatcaagtggcatatc |
8303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1029 times since January 2019
Visitors: 3074