View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_69 (Length: 366)
Name: NF0412_low_69
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_69 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 21583667 - 21584012
Alignment:
| Q |
21 |
acatcatcatcgttatctgttgttaagaacactttatctgaacccagcggaataatattcagtttatcaaaccctgcgtcaaaaatccaacgttgaaaca |
120 |
Q |
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| T |
21583667 |
acatcctcatcgttatctgttgttaagaacactttatctgaacccaacggtataatattcagtttatcaaaccctgcatcaaaaatccgacgttgaacca |
21583766 |
T |
|
| Q |
121 |
tcggaatagcatcttcgttcaactctgataccacaacacctcgactagcccatgctacatcaggttctgtggaaaaatactttgggacacaccccttact |
220 |
Q |
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|||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | |
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| T |
21583767 |
ctggaatagcatctccgttcaacactgataccaccacacctcgactagcccatgctacatcatgttctgtggaaaaatactttgggacataccccttatt |
21583866 |
T |
|
| Q |
221 |
agcaccctccacctcttcaaccaccttcccaccaccatctaatttcttccctttggcaccacctatgactcctccgtccaccacctgaaccatcacaccc |
320 |
Q |
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|||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21583867 |
agcacccttcacctctacagccaccttcccaccaccatctaatttcttccctttggcaccacctaagactcctccgtccaccacctgaaccatcacaccc |
21583966 |
T |
|
| Q |
321 |
tctgaatttttaaccccctcaccagcaccactgccctcctccttac |
366 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
21583967 |
tctgaatttttaacaccctcaccagcaccattgccctcctccttac |
21584012 |
T |
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