View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_71 (Length: 365)
Name: NF0412_low_71
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_71 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 33647894 - 33647536
Alignment:
| Q |
7 |
caaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattttt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33647894 |
caaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattctt |
33647795 |
T |
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| Q |
107 |
tatgtcaggtagggatggatcaatgggatgatctttcttctcggtgcgaggtgtacctacgtcttgttgcttctccaccatttggaaacctatttcctta |
206 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33647794 |
tatgtcaggtagggatggatcaatgggataatctttcttctcggtgtgaggtgtacctacgtcttgttgcttctccaccatttggaaacctatttcctta |
33647695 |
T |
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| Q |
207 |
aggaaatcgtcgtcctcgtcatcaacatcatctaccccttctagtatgccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaa |
306 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33647694 |
aggaaattgtcgtcctcgtcatcaacatcatctaccccttctagtatcccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaa |
33647595 |
T |
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| Q |
307 |
ccaagtcgctgcaccggttaccgttcgcatcagcggaactaacatctgcagatacatca |
365 |
Q |
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|||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||| |
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| T |
33647594 |
ccaagttgctgcaccggttacgatatgcatcagcggaactaacatctgcagatgcatca |
33647536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 25812696 - 25812355
Alignment:
| Q |
7 |
caaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattttt |
106 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
25812696 |
caaaggggcactcagtccaatcatgagaataa-cccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatatctcattgtt |
25812598 |
T |
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| Q |
107 |
tatgtcaggtagggatggatcaatgggatgatctttcttctcggtgcgaggtgtacctacgtcttgttgcttctccaccatttggaaacctatttcctta |
206 |
Q |
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|||||||||||||||||||| ||| |||| |||||||||||| || ||||||||| |||| | ||| |||| |||||||| ||| ||||||| ||| ||| |
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| T |
25812597 |
tatgtcaggtagggatggattaattggataatctttcttctcagttcgaggtgtagctacattttgctgctgctccaccaattgaaaacctacttcttta |
25812498 |
T |
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| Q |
207 |
aggaaatcgtcgtcctcgtcatcaacatcatctaccccttctagtatgccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaa |
306 |
Q |
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||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||| | | |||| |||| |||||||||| |
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| T |
25812497 |
aggaa---------------atcaacatcatctacgccttctagtatggatcgtagtatcctcttccttgaaccgaatatactactagacaccgagacaa |
25812413 |
T |
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| Q |
307 |
ccaagtcgctgcaccggttaccgttcgcatcagcggaactaacatctgcagatacatca |
365 |
Q |
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|||||||||||| | |||| | ||| ||||| ||||||||||||||||||| ||||| |
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| T |
25812412 |
tcaagtcgctgca-ctgttatcattcacatcaatggaactaacatctgcagatgcatca |
25812355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 25818362 - 25818160
Alignment:
| Q |
7 |
caaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattttt |
106 |
Q |
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||||| |||||| ||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||| |
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| T |
25818362 |
caaagtggcacttggtccaatcatgaggataagcccttaaacaaggcttccctttgaatgcaaacatcctaaattcatctgtgctatatatctcattttt |
25818263 |
T |
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| Q |
107 |
tatgtcaggtagggatggatcaatgggatgatctttcttctcggtgcgaggtgtacctacgtcttgttgcttctccaccatttggaaacctatttcctta |
206 |
Q |
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|||| |||||| |||||||||||| |||| |||||||||||| || |||||||||| ||| |||||||||| ||||| ||||||||||||| ||||||| |
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| T |
25818262 |
tatgccaggtatggatggatcaattggataatctttcttctcagttcgaggtgtacatacatcttgttgctgctcca-catttggaaacctgcttcctta |
25818164 |
T |
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| Q |
207 |
agga |
210 |
Q |
| |
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|||| |
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| T |
25818163 |
agga |
25818160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 25821676 - 25821582
Alignment:
| Q |
52 |
gcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattttttatgtcaggtagggatggatcaatgggatgatctttcttc |
146 |
Q |
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|||||||||||||| || |||||||||||||||||||| |||||| |||| |||||||||||||||||| |||| || ||| |||||||||| |
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| T |
25821676 |
gcttcactttgaatttatacatcctaaattcatctgtaatatatacctcattctttatgtcaggtagggatcgatcgatccgataatctttcttc |
25821582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 31810708 - 31810635
Alignment:
| Q |
15 |
cactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgt |
88 |
Q |
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||||||||||||||||||| ||| |||||||||||| ||| |||||||| || |||| |||||||||||||| |
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| T |
31810708 |
cactcagtccaatcatgagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatctgt |
31810635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 30122314 - 30122217
Alignment:
| Q |
15 |
cactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattttttatgtc |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||| || ||||| |
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| T |
30122314 |
cactcggtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtatacatcctaaactcatcggtactatatatcccattcttaatgtc |
30122217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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