View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_72 (Length: 365)
Name: NF0412_low_72
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_72 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 172 - 341
Target Start/End: Complemental strand, 32252678 - 32252509
Alignment:
| Q |
172 |
aagctttagtttggacaaataacacaaacaataagctagttatctaaataaagagagagaaaagatatttgacaatgttttgtgatgatgatgaattgat |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32252678 |
aagctttagtttggacaaataacacaaacaataagctaattatctaaatgaagagagagaaaagatatttgacaaggttttgtgatgatgatgaattgat |
32252579 |
T |
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| Q |
272 |
gattatgatcttggttaagataaaggataatattcttcaaaaaagatgaagatgatgttcatagatgatg |
341 |
Q |
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| T |
32252578 |
gattatgatcttggttaagataaaggataacattgttcaaaaaagatgaagatgatgttcatagatgatg |
32252509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 30569819 - 30569984
Alignment:
| Q |
53 |
gatgaagcaatacaggaaagtgatcttgaaaggaaaataaaacaagtcgtatacggaaggaaaaaagaaggccacaggaggtatggtattgaagatgaag |
152 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| |
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| T |
30569819 |
gatgaagcaatacattaaagtgatcttgaaaggaaaataaaacaagtcgtatacggaaggaaaaaagaaggccaaaagaggtatggtattgaaaatgaag |
30569918 |
T |
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| Q |
153 |
gatagaatagaatgtgagtaagctttagtttggacaaataacacaaacaataagctagttatctaa |
218 |
Q |
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| T |
30569919 |
gatagaatagaatgtgagtaagctttagtttcgacaaataacacaaacaacaagctaattatctaa |
30569984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 172 - 299
Target Start/End: Original strand, 7466 - 7591
Alignment:
| Q |
172 |
aagctttagtttggacaaataacacaaacaataagctagttatctaaataaagagagagaaaagatatttgacaatgttttgtgatgatgatgaattgat |
271 |
Q |
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||||||||||||||||||||||||||||||||||| || | |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7466 |
aagctttagtttggacaaataacacaaacaataagttaatcatctaaatgaagag--agaaaagatagttgacaatgttttgtgatgatgatgaattgat |
7563 |
T |
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| Q |
272 |
gattatgatcttggttaagataaaggat |
299 |
Q |
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| T |
7564 |
gattatgatcttggttaagataaaggat |
7591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 24176287 - 24176209
Alignment:
| Q |
267 |
ttgatgattatgatcttggttaagataaaggataatattcttcaaaaaagatgaag-atgatgttcatagatgatgatgt |
345 |
Q |
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|||||| | ||||| ||||||||||| | |||| || ||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
24176287 |
ttgatggtgatgatattggttaagatgagggatgatgttctt-aaaaaagatgaaggatgatgttcatagatgatgatgt |
24176209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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