View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_73 (Length: 364)
Name: NF0412_low_73
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_73 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 353
Target Start/End: Original strand, 2722419 - 2722742
Alignment:
| Q |
30 |
ctaagcttgtaaactagtggtttacaagtaccaacgagtttgacagctatggttgagtaggacaactatggttgggtagttgctttatttactggtgagt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2722419 |
ctaagcttgtaaactagtggtttacaagtaccaacgagtttgacagctatggttgagtaggacaactatggttgggtagttgctttatttactggtgagt |
2722518 |
T |
|
| Q |
130 |
ggttgattgacgtttagtttcctctgatgtgtggcaaacatatgacaggttcaagttatgaagatcaagtcttgagttttcatattaacttcttacttaa |
229 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2722519 |
ggttgattgacatttagtttcctctgatgtgtggcaaacatatgacaggttcaagttatgaagatcaagtcttgagttttcatattaacttcttacttaa |
2722618 |
T |
|
| Q |
230 |
actaaactgcggttttggcatttcaagaaagtaaattttaaatgaaaagttacatatgtatgttcatataaattcattcatgtactttcacccaatagct |
329 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2722619 |
actaaactgcggtttaggcatttcaagaaagtaaattttaaatgaaaagttacatatgtatgttcatataaattcattcatgtactttcacccaatagct |
2722718 |
T |
|
| Q |
330 |
taggttttgggattgcttattcat |
353 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2722719 |
taggttttgggattgcttattcat |
2722742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 90 - 274
Target Start/End: Original strand, 2709073 - 2709255
Alignment:
| Q |
90 |
gacaactatggttgggtagttgctttatttactggtgagtggttgattgacgtttagtttcctctgatgtgtggcaaacatatgacaggttcaagttatg |
189 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| || |||| ||||||||| | ||||||| ||| ||| ||||| || ||||||||||| ||||||| |
|
|
| T |
2709073 |
gacaactatggttgaggagttgctttatttacaggcgagtagttgattgatgcttagttttctccgatatgtggtggac--atgacaggttctagttatg |
2709170 |
T |
|
| Q |
190 |
aagatcaagtcttgagttttcatattaacttcttacttaaactaaactgcggttttggcatttcaagaaagtaaattttaaatga |
274 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2709171 |
aagatcaagtttagagttttcatattaacttcttacttcaactgaactgtggtttaggcatttcaagaaagtaaattttaaatga |
2709255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 390 times since January 2019
Visitors: 3060