View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_8 (Length: 520)
Name: NF0412_low_8
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 58 - 477
Target Start/End: Complemental strand, 25062679 - 25062260
Alignment:
| Q |
58 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgc |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25062679 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgc |
25062580 |
T |
|
| Q |
158 |
acctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaa |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25062579 |
acctaaactataatgtttcaaatttgtttatccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaa |
25062480 |
T |
|
| Q |
258 |
acagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcacctt |
357 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25062479 |
atagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaactgaatttggagaagattcacctt |
25062380 |
T |
|
| Q |
358 |
atgatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatattgcgggcattatttg |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25062379 |
atgatatagtttctcttgatgggaagacaactgttaattactccaacgtgcctttccctgaagatgtagactggccttgatatattgcgggcattatttg |
25062280 |
T |
|
| Q |
458 |
gtctcttattcgtgaatgat |
477 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25062279 |
gtctcttattcgtgaatgat |
25062260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 58 - 444
Target Start/End: Complemental strand, 25071382 - 25070999
Alignment:
| Q |
58 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgc |
157 |
Q |
| |
|
|||||||||| || |||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| | ||| |
|
|
| T |
25071382 |
gtgagatgaaaatcaaggccattgatacgtggtctgcaattcaaaaaagagatgattggagagatttttgtttcatgtaagtatggtcgcatttgtatgc |
25071283 |
T |
|
| Q |
158 |
acctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaa |
257 |
Q |
| |
|
||| |||||| ||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25071282 |
accaaaactaaaatattacaaatttgtttttcaataatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaa |
25071183 |
T |
|
| Q |
258 |
acagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcacctt |
357 |
Q |
| |
|
| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
25071182 |
atagtaacaaaggagatattgaatgtcatcaaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattcacctt |
25071083 |
T |
|
| Q |
358 |
atgatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatattg |
444 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25071082 |
atgatatggttactcttgatgggaagacaa---ttaatttctccaatgtgcctttccctgaagatgtagattggccttgatatattg |
25070999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 58 - 443
Target Start/End: Complemental strand, 25084288 - 25083904
Alignment:
| Q |
58 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgc |
157 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||| | ||| |
|
|
| T |
25084288 |
gtgagatgaaaataaaggccattgatttgtggtctgcaattcagaaaatagatgattggagagatgtttgtttcgtgtaagtacgatctcatttgtatgc |
25084189 |
T |
|
| Q |
158 |
acctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaa |
257 |
Q |
| |
|
|||||| ||| ||| |||||||||||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25084188 |
acctaa-ctaaaatatttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacaaggggagtgaa |
25084090 |
T |
|
| Q |
258 |
acagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcacctt |
357 |
Q |
| |
|
| ||||||||| || ||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
25084089 |
atagtaacaaaagagatattgaatgtcatcgaagaagcagagtggaaaccaagtctatattggaagttaatgccagctgaatttggagaagattctcctt |
25083990 |
T |
|
| Q |
358 |
atgatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatatt |
443 |
Q |
| |
|
||||||| ||||||||||||||||||| || | |||||| |||| |||||||||| ||||| | |||||| ||||||||||||||| |
|
|
| T |
25083989 |
atgatatggtttctcttgatgggaagataaatattaatttctccgatgtgccttttcctgatggtgtagagtggccttgatatatt |
25083904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 155 - 442
Target Start/End: Complemental strand, 25089973 - 25089683
Alignment:
| Q |
155 |
tgcacctaaactataatgtttcaaatttgtttctccgtaat---ttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgagggg |
251 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||| || |||| ||| || |||||||||||||||||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
25089973 |
tgcacctaatctaaaatgttttaaatttgtttatcaataataatttagtttggtggtttgattatttcttagtgatggagtacatttatcaactgagggg |
25089874 |
T |
|
| Q |
252 |
agtgaaacagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagatt |
351 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| || || |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |
|
|
| T |
25089873 |
agtgaaatagtaacaaaggagatattgaatgtcataaagaaagcagagtgggaaccaagtctatattgtaagttaatgccagctgaatttggagaagata |
25089774 |
T |
|
| Q |
352 |
caccttatgatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatat |
442 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
25089773 |
caccttatgatatggtttctcttgacgggaagacaactgttaatttctccaatgtgccttttcctcaaggtgtagagtggccttgatatat |
25089683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 63 - 355
Target Start/End: Complemental strand, 25058464 - 25058166
Alignment:
| Q |
63 |
atgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttattt--gcacc |
160 |
Q |
| |
|
|||||||| |||| ||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||||||||| || |||||| ||| | | || |
|
|
| T |
25058464 |
atgaacatcaaggccattgatttgtggtctttaattcagagaagagatgattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccc |
25058365 |
T |
|
| Q |
161 |
taaacta-taa---tgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtga |
256 |
Q |
| |
|
|| | || ||| | | ||||||||| | || | |||||||||| || |||| |||||| ||||||||||| ||||| | || |||||||||||| |
|
|
| T |
25058364 |
tatattaataaatatatatcaaatttgcatttcaatgatttaattagatgatttggttattttttagtgatggaattcatttctctgctgaggggagtga |
25058265 |
T |
|
| Q |
257 |
aacagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcacc |
355 |
Q |
| |
|
|| || ||||||||||| | || || ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
25058264 |
aatggtgtcaaaggaaataattaaggttatcaaagaagcagagtgggaaccaaatctatattggaagacaatgccagttgaatttggagaagattcacc |
25058166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 25090580 - 25090491
Alignment:
| Q |
58 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctc |
147 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
25090580 |
gtgagatgaaaataaaggtcattgatatgtggtctgcaatttagaaaagagatgattggaaagatgtttgtttcatgtaagtatgatctc |
25090491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 25094759 - 25094670
Alignment:
| Q |
60 |
gagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcat |
149 |
Q |
| |
|
|||||||| || |||| ||||||| ||||||||||||| || ||||| ||| | ||| || ||||||| |||| |||||| || |||||| |
|
|
| T |
25094759 |
gagatgaatatcaaggccattgatctgtggtctgcaatccaaaaaagggataactggcgaaatgtttgcttcacgtaagtttgctctcat |
25094670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 356 times since January 2019
Visitors: 3059