View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_88 (Length: 352)
Name: NF0412_low_88
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_88 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 28 - 323
Target Start/End: Original strand, 17455513 - 17455808
Alignment:
| Q |
28 |
cagtcagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatac |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17455513 |
cagtcagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatac |
17455612 |
T |
|
| Q |
128 |
attgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtcgaaaatgtgaaagaaaagtgaagtgcataaactagtggtcaaagatac |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17455613 |
attgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcgaaaatgtgaaagaaaagtgaagtgcataaactagtggtcaaagatac |
17455712 |
T |
|
| Q |
228 |
agacattaaagttacccaagtcagtttgtttatttatatacaagtcatttttatggtgagtataaagacaaataatatagtacctatctcgactct |
323 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17455713 |
agacattaaagttaccttagtcagtttgtttatttatatacaagtcatttttacggtgagtataaagacaaataatatagtacctatctcgactct |
17455808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 17461511 - 17461338
Alignment:
| Q |
28 |
cagtcagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatac |
127 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17461511 |
cagtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagcgccaccatac |
17461412 |
T |
|
| Q |
128 |
attgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtcgaaaatgtgaaagaaaagtgaa |
201 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| |||| ||||| || | ||||||||||||||||||| |
|
|
| T |
17461411 |
attgtttgctttcttagctttttttgagagttccctgtaaaaggttgaaatcaacaatgtgaaagaaaagtgaa |
17461338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 774866 - 774964
Alignment:
| Q |
115 |
agtgccaccatacattgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtcgaaaatgtgaaagaaaagtgaagtgcataaacta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
774866 |
agtgccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcaacaatgtgaaagaaaagtgaagtgcataaacta |
774964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 775196 - 775245
Alignment:
| Q |
211 |
ctagtggtcaaagatacagacattaaagttacccaagtcagtttgtttat |
260 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
775196 |
ctagtggtcaaagatacaaacattaaagttacaaaagtcagtttgattat |
775245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 179
Target Start/End: Complemental strand, 52142940 - 52142793
Alignment:
| Q |
32 |
cagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattg |
131 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||||| |||| |||||||| |||| ||||||||||||||||| | |||||||| | ||||||||| |||| |
|
|
| T |
52142940 |
cagtgccatggttgcaatggtaaatatgccttgtagaaaaatgtacattagcatgcgattttgatccccaaatagcccacttaggcgccaccatatattg |
52142841 |
T |
|
| Q |
132 |
tttgctttcttagcttttcttgagaattccctgcaaaacattgaagtc |
179 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| ||| ||||||||| |
|
|
| T |
52142840 |
tttgctttcttagctttttttgagagttccctgtgaaagattgaagtc |
52142793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1804 times since January 2019
Visitors: 3091