View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_89 (Length: 351)
Name: NF0412_low_89
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_89 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 58 - 351
Target Start/End: Complemental strand, 591327 - 591034
Alignment:
| Q |
58 |
atgaacagccagaagtcaaggttgtagacgtacaagcattcgaatcggaagaacacatctccaatttttggttcaaggacgacacttgattctcctcctt |
157 |
Q |
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| T |
591327 |
atgaacagccagaagtcaaggttgtagacgtacaaccattcgaatcagaagaacacatctccaatttttggttcaaggacgacacttgattctcctcctt |
591228 |
T |
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| Q |
158 |
gtcagtttctcttggctgaagagtatgtattttcctaaaaggcttaatgtttggctctgggagatcgcagttctcgacatactcaaatgatttcttagca |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591227 |
gtcagtttctcttggctgaagagtatgtattttcctaaaaggcttaatgtttggctctgggagatcgcagttctcgacatactcaaatgatttcttagca |
591128 |
T |
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| Q |
258 |
accaaggaagccaaatcgtcttttcctgtagtgcgccaccaaggctgagatttttcagctcccaaccaatgtggttcaaaatcagacgatgtac |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591127 |
accaaggaagccaaatcgtcttttcctgtagtgcgccaccaaggctgagatttttcagctcccaaccaatgtggttcaaaatcagacgatgtac |
591034 |
T |
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