View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_90 (Length: 349)
Name: NF0412_low_90
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 43917779 - 43917470
Alignment:
| Q |
30 |
atctttaaattttaaacaaggaaaaggtggatgggaagtatccagcatgacttttaactagtttaaaagttgtagttgttttagataacaggctggggcc |
129 |
Q |
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| T |
43917779 |
atctttaaattttaaacaaggaaaaggtggatgggaagtatccagcatgacttttaactagtttaaaagttgtagttgttttagataacaggctggggcc |
43917680 |
T |
|
| Q |
130 |
agggtatgacaaattggtgaggtggttggnnnnnnnagaacacgtctggaatataaatttggatgcgttttcagccgaaactcaacgaaagaaaagcaaa |
229 |
Q |
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| T |
43917679 |
agggtatgacaaattggtgaggtggttggtttttttagaacacggctggaatagaaattttgatgcgttttcagccgaaactcaaccaaagaaaagcaaa |
43917580 |
T |
|
| Q |
230 |
ctctttttcttttgtttaacagaaattcgtgcaacaaggttacactgtgtttgattggaagtttcctcttttcctcgccttgtagacgatgcttggcctt |
329 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
43917579 |
ctctttttcttctgtttaacagaaattcatgcaacaaggttacactgtgtttgattggaagtttcgtcttttcctcaccttgtagacgatgcttggcctt |
43917480 |
T |
|
| Q |
330 |
aacctctctg |
339 |
Q |
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||||| |||| |
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| T |
43917479 |
aacctttctg |
43917470 |
T |
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