View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_92 (Length: 348)

Name: NF0412_low_92
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_92
NF0412_low_92
[»] chr2 (20 HSPs)
chr2 (45-184)||(10463616-10463755)
chr2 (45-184)||(10518554-10518700)
chr2 (53-184)||(10545179-10545310)
chr2 (90-184)||(10507380-10507474)
chr2 (90-184)||(7476506-7476598)
chr2 (46-181)||(10474194-10474340)
chr2 (107-177)||(10848829-10848897)
chr2 (197-259)||(969213-969281)
chr2 (197-259)||(1834748-1834816)
chr2 (197-259)||(5165318-5165386)
chr2 (105-175)||(9079984-9080056)
chr2 (197-259)||(31970991-31971059)
chr2 (197-259)||(36086924-36086992)
chr2 (197-259)||(36581754-36581822)
chr2 (91-184)||(7478672-7478763)
chr2 (197-259)||(8876855-8876923)
chr2 (197-259)||(38961170-38961238)
chr2 (100-166)||(10488751-10488815)
chr2 (90-177)||(10492808-10492891)
chr2 (101-155)||(10507523-10507577)
[»] chr5 (14 HSPs)
chr5 (53-181)||(33602589-33602724)
chr5 (197-259)||(4375802-4375870)
chr5 (197-259)||(5590424-5590492)
chr5 (197-259)||(24029145-24029213)
chr5 (197-259)||(25819863-25819931)
chr5 (198-259)||(24758106-24758173)
chr5 (197-259)||(666523-666591)
chr5 (197-259)||(6930105-6930173)
chr5 (197-259)||(16051731-16051799)
chr5 (197-259)||(31885608-31885676)
chr5 (197-259)||(31940791-31940859)
chr5 (197-259)||(42321348-42321416)
chr5 (100-168)||(33575332-33575399)
chr5 (226-259)||(32263246-32263279)
[»] chr4 (14 HSPs)
chr4 (196-259)||(7401104-7401173)
chr4 (197-259)||(6940867-6940935)
chr4 (197-259)||(7364512-7364580)
chr4 (197-259)||(10139165-10139233)
chr4 (197-259)||(11199564-11199632)
chr4 (197-259)||(11967966-11968034)
chr4 (197-259)||(17622951-17623019)
chr4 (197-259)||(26108990-26109058)
chr4 (197-259)||(27289761-27289829)
chr4 (197-259)||(28118430-28118498)
chr4 (197-259)||(45020124-45020192)
chr4 (197-259)||(53273352-53273420)
chr4 (197-259)||(55990877-55990945)
chr4 (197-259)||(55187222-55187290)
[»] chr8 (10 HSPs)
chr8 (196-259)||(14717989-14718058)
chr8 (197-259)||(7218108-7218176)
chr8 (197-259)||(16844063-16844131)
chr8 (197-259)||(17046967-17047035)
chr8 (197-259)||(27466465-27466533)
chr8 (197-259)||(34804513-34804581)
chr8 (197-259)||(36217857-36217925)
chr8 (197-259)||(39684470-39684538)
chr8 (198-259)||(44604325-44604392)
chr8 (197-259)||(29570669-29570737)
[»] scaffold0037 (1 HSPs)
scaffold0037 (197-259)||(5642-5710)
[»] chr7 (10 HSPs)
chr7 (197-259)||(4409815-4409883)
chr7 (197-259)||(17276874-17276942)
chr7 (197-259)||(18957550-18957618)
chr7 (197-259)||(22345686-22345754)
chr7 (197-259)||(37670552-37670620)
chr7 (197-259)||(45619365-45619433)
chr7 (197-259)||(8791159-8791227)
chr7 (197-259)||(27032092-27032160)
chr7 (226-259)||(4409236-4409269)
chr7 (226-259)||(23640376-23640409)
[»] chr6 (4 HSPs)
chr6 (197-259)||(32244179-32244247)
chr6 (198-259)||(26183614-26183681)
chr6 (197-259)||(3849274-3849342)
chr6 (197-259)||(20790280-20790348)
[»] chr3 (13 HSPs)
chr3 (197-259)||(4017646-4017714)
chr3 (197-259)||(14588672-14588740)
chr3 (197-259)||(19535761-19535829)
chr3 (197-259)||(22348028-22348096)
chr3 (197-259)||(26880705-26880773)
chr3 (197-259)||(29499053-29499121)
chr3 (197-259)||(30270364-30270432)
chr3 (197-259)||(33933737-33933805)
chr3 (197-259)||(48543838-48543906)
chr3 (197-259)||(53021715-53021783)
chr3 (197-259)||(54740867-54740935)
chr3 (198-259)||(36593135-36593202)
chr3 (226-259)||(45600220-45600253)
[»] chr1 (12 HSPs)
chr1 (197-259)||(17584624-17584692)
chr1 (197-259)||(25661090-25661158)
chr1 (197-259)||(33375110-33375178)
chr1 (197-259)||(33641334-33641402)
chr1 (197-259)||(36166466-36166534)
chr1 (197-259)||(38799317-38799385)
chr1 (197-259)||(45102908-45102976)
chr1 (197-259)||(51835084-51835152)
chr1 (198-259)||(11755161-11755228)
chr1 (197-259)||(31222381-31222449)
chr1 (197-259)||(40433491-40433559)
chr1 (197-259)||(43122060-43122128)
[»] scaffold0166 (1 HSPs)
scaffold0166 (198-259)||(585-652)
[»] scaffold0020 (1 HSPs)
scaffold0020 (197-259)||(123924-123992)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 10463755 - 10463616
Alignment:
Q  45 cattttcagatatagcatgatatacgaaaaccagctgttacttctcccccatttccaaatcttattttgtaaataattttctttttgttcttattgtgtt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10463755 cattttcagatatagcatgatatacgaaaaccagctgttacttctcccccatttccaaatcttattttgtaaataattttctttttgttattattgtgtt 10463656  T
Q  145 tgtaggaagcaattcgtagagccacgatagcacggaaatt 184  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10463655 tgtaggaagcaattcgtagagccacgatagcacggaaatt 10463616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 10518700 - 10518554
Alignment:
Q  45 cattttcagatatagcatgatatacgaaaaccagctgttacttctccccca-------tttccaaatcttattttgtaaataattttctttttgttctta 137  Q
    |||||||| ||||||  ||||||| ||||||||| ||||||||| ||||||       ||| ||||||||||||||||||| |||||||||||||| |||    
T  10518700 cattttcaaatatagtgtgatatatgaaaaccagttgttacttcgcccccaccccccattttcaaatcttattttgtaaattattttctttttgttatta 10518601  T
Q  138 ttgtgtttgtaggaagcaattcgtagagccacgatagcacggaaatt 184  Q
    |||||| ||||||||||| ||||| | ||||| ||||||||||||||    
T  10518600 ttgtgtgtgtaggaagcagttcgtcgggccaccatagcacggaaatt 10518554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 10545310 - 10545179
Alignment:
Q  53 gatatagcatgatatacgaaaaccagctgttacttctcccccatttccaaatcttattttgtaaataattttctttttgttcttattgtgtttgtaggaa 152  Q
    |||||||  ||||||||||||||||| ||||||||| ||||||   |||  |||||| ||||||||| |||| |||||||| ||||||||||||||||||    
T  10545310 gatatagtgtgatatacgaaaaccagttgttacttcacccccacccccatctcttatcttgtaaatagttttatttttgttattattgtgtttgtaggaa 10545211  T
Q  153 gcaattcgtagagccacgatagcacggaaatt 184  Q
    ||  ||||  | ||||| ||||||||||||||    
T  10545210 gctgttcgccgggccaccatagcacggaaatt 10545179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 10507474 - 10507380
Alignment:
Q  90 cccccatttccaaatcttattttgtaaataattttctttttgttcttattgtgtttgtaggaagcaattcgtagagccacgatagcacggaaatt 184  Q
    ||||||||| ||||||||| ||||||| | |||||||| ||||| ||||||||| ||||||||||| ||||| |  |||| ||||||||||||||    
T  10507474 cccccattttcaaatcttaatttgtaagttattttcttgttgttattattgtgtgtgtaggaagcagttcgtcggaccaccatagcacggaaatt 10507380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 7476506 - 7476598
Alignment:
Q  90 cccccatttccaaatcttattttgtaaataattttctttttgttcttattgtgtttgtaggaagcaattcgtagagccacgatagcacggaaatt 184  Q
    ||||||| | ||||||||||||||| | || ||||||||||||| ||||||||  ||||||||||||||| ||| || || ||||||| ||||||    
T  7476506 cccccatcttcaaatcttattttgtcactagttttctttttgttattattgtg--tgtaggaagcaattcatagggcaactatagcacagaaatt 7476598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 10474340 - 10474194
Alignment:
Q  46 attttcagatatagcatgatatacgaaaaccagctgttacttctcccccatttccaa-------atcttattttgtaaataattttctttttgttcttat 138  Q
    ||||| ||||||||  ||||||||||||||||| ||||||||| ||||||  ||| |       ||||||| ||||||| | ||||||||||||| ||||    
T  10474340 atttttagatatagtgtgatatacgaaaaccagttgttacttcgcccccacctcccatctacagatcttatcttgtaaacagttttctttttgttattat 10474241  T
Q  139 tgtgtttgt----aggaagcaattcgtagagccacgatagcacggaa 181  Q
    ||||| |||    |||||||| ||||||| ||||| |||||||||||    
T  10474240 tgtgtgtgtgtgtaggaagcagttcgtagggccaccatagcacggaa 10474194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 10848897 - 10848829
Alignment:
Q  107 tattttgtaaataattttctttttgttcttattgtgtttgtaggaagcaattcgtagagccacgatagcac 177  Q
    ||||||| ||||||||||||||||||| ||||||||  ||||||||||| ||||||| ||||| |||||||    
T  10848897 tattttgaaaataattttctttttgttattattgtg--tgtaggaagcagttcgtagggccaccatagcac 10848829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 969213 - 969281
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  969213 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 969281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 1834748 - 1834816
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaa------gaatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| ||||||||||||||||||      ||||||||||| ||||||||||||||||||||||    
T  1834748 aaattgaatgaaatgagctttaaccaaaaattgttgaatgctacttcaaaaaactatttctccccaatt 1834816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 5165318 - 5165386
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  5165318 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 5165386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 9079984 - 9080056
Alignment:
Q  105 cttattttgtaaataattttctttttgttctta--ttgtgtttgtaggaagcaattcgtagagccacgatagc 175  Q
    ||||||||||||||| ||||||||||||| |||  |||||| ||||||||||| ||||||| ||||| |||||    
T  9079984 cttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagc 9080056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 31970991 - 31971059
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  31970991 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 31971059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 36086992 - 36086924
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  36086992 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 36086924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 36581822 - 36581754
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  36581822 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 36581754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 7478672 - 7478763
Alignment:
Q  91 ccccatttccaaatcttattttgtaaataattttctttttgttcttattgtgtttgtaggaagcaattcgtagagccacgatagcacggaaatt 184  Q
    |||||| | ||||||||||||||||| || ||||||||||||| ||||||||  ||||||||||| ||| ||| || || | |||||| |||||    
T  7478672 ccccatcttcaaatcttattttgtaactagttttctttttgttattattgtg--tgtaggaagcagttcttagggcaaccagagcacgcaaatt 7478763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 8876855 - 8876923
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaa------gaatgctactttaaaaaactatttctccccaatt 259  Q
    ||||||||||  |||||||||||||||||      ||||||||||| ||||||||||||||||||||||    
T  8876855 aaattgaatgggatgagctttaaccaaaaattgttgaatgctacttcaaaaaactatttctccccaatt 8876923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 38961238 - 38961170
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||  |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  38961238 aaattgaatagaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 38961170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 10488815 - 10488751
Alignment:
Q  100 caaatcttattttgtaaataattttctttttgttcttattgtgtttgtaggaagcaattcgtagagc 166  Q
    ||||||||||||||||| || |||||||| |||| ||||||||  |||||||||||||  |||||||    
T  10488815 caaatcttattttgtaactagttttctttctgttattattgtg--tgtaggaagcaatatgtagagc 10488751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 10492891 - 10492808
Alignment:
Q  90 cccccatttccaaatcttattttgtaaataattttctttttgttcttattgtgtttgtaggaagcaattcgtagagccacgatagcac 177  Q
    ||||||| | |||||||||||| |||| || ||||||||||||| || |||    ||||||||||||||||||| || || |||||||    
T  10492891 cccccatcttcaaatcttatttggtaactagttttctttttgttattgttg----tgtaggaagcaattcgtagggcaaccatagcac 10492808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 10507577 - 10507523
Alignment:
Q  101 aaatcttattttgtaaataattttctttttgttcttattgtgtttgtaggaagca 155  Q
    ||||||||||||||| |||  |||||||||||| ||||||| | |||||||||||    
T  10507577 aaatcttattttgtatataggtttctttttgttattattgtatgtgtaggaagca 10507523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 33602724 - 33602589
Alignment:
Q  53 gatatagcatgatatacgaaaaccagctgttacttctccccca-------tttccaaatcttattttgtaaataattttctttttgttcttattgtgttt 145  Q
    ||||||| |||||||| ||||||||| ||||||||| ||||||       | | |||||||||| ||||||||| ||||||||||||| ||||||||| |    
T  33602724 gatatagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgt 33602625  T
Q  146 gtaggaagcaattcgtagagccacgatagcacggaa 181  Q
    |||||||||| || |||| ||||| |||||||||||    
T  33602624 gtaggaagcagtttgtagggccaccatagcacggaa 33602589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 4375870 - 4375802
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  4375870 aaattgaatggaatgagctttaaccaaaagttattgaatgctacttcaaaaaactatttctccccaatt 4375802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 5590492 - 5590424
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  5590492 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 5590424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 24029213 - 24029145
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  24029213 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 24029145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 25819863 - 25819931
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  25819863 aaattgaatggaatgagctttaaccaaaagttgttaaatgctacttcaaaaaactatttctccccaatt 25819931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 24758106 - 24758173
Alignment:
Q  198 aattgaatgtaatgagctttaaccaaaa------gaatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||||| |||||||||||||||      ||||||||||| ||||||||||||||||||||||    
T  24758106 aattgaatgtaacgagctttaaccaaaaattgttgaatgctacttcaaaaaactatttctccccaatt 24758173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 666591 - 666523
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| ||||| |||||||||||||      |||||||||| ||||||||||||||||||||||    
T  666591 aaattgaatggaatgaactttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 666523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 6930173 - 6930105
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||| ||||||||||||      |||||||||| ||||||||||||||||||||||    
T  6930173 aaattgaatggaatgagttttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 6930105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 16051799 - 16051731
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||| ||||||||||||      |||||||||| ||||||||||||||||||||||    
T  16051799 aaattgaatgaaatgagttttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 16051731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 31885676 - 31885608
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||| ||||      |||||||||| ||||||||||||||||||||||    
T  31885676 aaattgaatgaaatgagctttaaccgaaagttgatgaatgctacttcaaaaaactatttctccccaatt 31885608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 31940859 - 31940791
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||| ||||      |||||||||| ||||||||||||||||||||||    
T  31940859 aaattgaatggaatgagctttaaccgaaagttgttgaatgctacttcaaaaaactatttctccccaatt 31940791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 42321348 - 42321416
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||| ||      |||||||||| ||||||||||||||||||||||    
T  42321348 aaattgaatggaatgagctttaaccaagagttgttgaatgctacttcaaaaaactatttctccccaatt 42321416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 33575332 - 33575399
Alignment:
Q  100 caaatcttattttgtaaataattttctttttgttcttattgtgtttgtaggaagcaattcgtagagcca 168  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||| ||||||||||| ||| ||| ||||    
T  33575332 caaatcttatcttgtaaatagttttctttt-gttattattgtgtgtgtaggaagcagttcatagggcca 33575399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 32263279 - 32263246
Alignment:
Q  226 gaatgctactttaaaaaactatttctccccaatt 259  Q
    ||||||||||| ||||||||||||||||||||||    
T  32263279 gaatgctacttcaaaaaactatttctccccaatt 32263246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 7401173 - 7401104
Alignment:
Q  196 taaattgaatgtaatgagctttaaccaaaa------gaatgctactttaaaaaactatttctccccaatt 259  Q
    ||||||||||||||||||||||||||||||      ||||||||||| ||||||||||||||||||||||    
T  7401173 taaattgaatgtaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 7401104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 6940935 - 6940867
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  6940935 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 6940867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 7364512 - 7364580
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  7364512 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 7364580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 10139233 - 10139165
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  10139233 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 10139165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 11199564 - 11199632
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  11199564 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 11199632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 11968034 - 11967966
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  11968034 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 11967966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 17622951 - 17623019
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  17622951 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 17623019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 26108990 - 26109058
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  26108990 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 26109058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 27289829 - 27289761
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  27289829 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 27289761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 28118498 - 28118430
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  28118498 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 28118430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 45020192 - 45020124
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  45020192 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 45020124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 53273352 - 53273420
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  53273352 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 53273420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 55990877 - 55990945
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  55990877 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 55990945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 55187222 - 55187290
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| ||||||||||||| |||||      |||||||||| ||||||||||||||||||||||    
T  55187222 aaattgaatggaatgagctttaactaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 55187290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 14717989 - 14718058
Alignment:
Q  196 taaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||||||| ||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  14717989 taaattgaatgtaacgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 14718058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 7218108 - 7218176
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  7218108 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 7218176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 16844063 - 16844131
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  16844063 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 16844131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 17047035 - 17046967
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  17047035 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 17046967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 27466465 - 27466533
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  27466465 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 27466533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 34804513 - 34804581
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  34804513 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 34804581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 36217925 - 36217857
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  36217925 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 36217857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 39684470 - 39684538
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  39684470 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 39684538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 44604392 - 44604325
Alignment:
Q  198 aattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    ||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  44604392 aattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 44604325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 29570669 - 29570737
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| ||||| |||||||||||||      |||||||||| ||||||||||||||||||||||    
T  29570669 aaattgaatggaatgaactttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 29570737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 5642 - 5710
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  5642 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 5710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 4409815 - 4409883
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  4409815 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 4409883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 17276874 - 17276942
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  17276874 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 17276942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 18957618 - 18957550
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  18957618 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 18957550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 22345754 - 22345686
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  22345754 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 22345686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 37670620 - 37670552
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  37670620 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 37670552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 45619365 - 45619433
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  45619365 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 45619433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 8791159 - 8791227
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||| ||||||||||      |||||||||| ||||||||||||||||||||||    
T  8791159 aaattgaatggaatgagctctaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 8791227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 27032160 - 27032092
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| ||||| |||||||||||||      |||||||||| ||||||||||||||||||||||    
T  27032160 aaattgaatggaatgaactttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 27032092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 4409269 - 4409236
Alignment:
Q  226 gaatgctactttaaaaaactatttctccccaatt 259  Q
    ||||||||||| ||||||||||||||||||||||    
T  4409269 gaatgctacttcaaaaaactatttctccccaatt 4409236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 23640409 - 23640376
Alignment:
Q  226 gaatgctactttaaaaaactatttctccccaatt 259  Q
    ||||||||||| ||||||||||||||||||||||    
T  23640409 gaatgctacttcaaaaaactatttctccccaatt 23640376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 32244179 - 32244247
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  32244179 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 32244247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 26183614 - 26183681
Alignment:
Q  198 aattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    ||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  26183614 aattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 26183681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 3849274 - 3849342
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||| ||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  3849274 aaattgaatggaatgggctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 3849342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 20790280 - 20790348
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||| ||||||      |||||||||| ||||||||||||||||||||||    
T  20790280 aaattgaatggaatgagctttaatcaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 20790348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 4017646 - 4017714
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  4017646 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 4017714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 14588740 - 14588672
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  14588740 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 14588672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 19535761 - 19535829
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  19535761 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 19535829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 22348096 - 22348028
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  22348096 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 22348028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 26880705 - 26880773
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  26880705 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 26880773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 29499053 - 29499121
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  29499053 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 29499121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 30270432 - 30270364
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  30270432 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 30270364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 33933805 - 33933737
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  33933805 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 33933737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 48543838 - 48543906
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  48543838 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 48543906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 53021715 - 53021783
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  53021715 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 53021783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 54740867 - 54740935
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaa------gaatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| ||||||||||||||||||      ||||||||||| ||||||||||||||||||||||    
T  54740867 aaattgaatggaatgagctttaaccaaaaattgttgaatgctacttcaaaaaactatttctccccaatt 54740935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 36593202 - 36593135
Alignment:
Q  198 aattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    ||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  36593202 aattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 36593135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 45600253 - 45600220
Alignment:
Q  226 gaatgctactttaaaaaactatttctccccaatt 259  Q
    ||||||||||| ||||||||||||||||||||||    
T  45600253 gaatgctacttcaaaaaactatttctccccaatt 45600220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 17584624 - 17584692
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  17584624 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 17584692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 25661158 - 25661090
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  25661158 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 25661090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 33375178 - 33375110
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  33375178 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 33375110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 33641334 - 33641402
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  33641334 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 33641402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 36166534 - 36166466
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  36166534 aaattgaatgaaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 36166466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 38799317 - 38799385
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  38799317 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 38799385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 45102908 - 45102976
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  45102908 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 45102976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 51835084 - 51835152
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  51835084 aaattgaatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 51835152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 11755228 - 11755161
Alignment:
Q  198 aattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||| ||||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  11755228 aattgaatttaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 11755161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 31222449 - 31222381
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| ||||| |||||||||||||      |||||||||| ||||||||||||||||||||||    
T  31222449 aaattgaatggaatgaactttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 31222381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 40433559 - 40433491
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||  |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  40433559 aaattgaatagaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 40433491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 43122128 - 43122060
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||| ||| |||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  43122128 aaattgcatggaatgagctttaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 43122060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 585 - 652
Alignment:
Q  198 aattgaatgtaatgagctttaaccaaaa------gaatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||||| |||||||||||||||      ||||||||||| ||||||||||||||||||||||    
T  585 aattgaatgtaacgagctttaaccaaaaattgttgaatgctacttcaaaaaactatttctccccaatt 652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 123924 - 123992
Alignment:
Q  197 aaattgaatgtaatgagctttaaccaaaag------aatgctactttaaaaaactatttctccccaatt 259  Q
    |||||||||| ||||||||| |||||||||      |||||||||| ||||||||||||||||||||||    
T  123924 aaattgaatggaatgagcttcaaccaaaagttgttgaatgctacttcaaaaaactatttctccccaatt 123992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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