View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_95 (Length: 341)
Name: NF0412_low_95
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_95 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 28 - 296
Target Start/End: Original strand, 33535867 - 33536135
Alignment:
| Q |
28 |
agtctcggcaatagaatcaccaatactccttgtaaaagcagtaccagggtacatcccatttgggacccacaacctaggaggatcgccatcatcaccttct |
127 |
Q |
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| T |
33535867 |
agtctcggcaatagaatcaccaatactccttgtaaaagcagtaccagggtacatcccatttgggacccacaacctaggaggatcgccatcatcaccttct |
33535966 |
T |
|
| Q |
128 |
tcatcactaccccaacacggaacttcaggattctttaacccttcaatttgatccaaagttagaaccctagcaccacaaagtttcactctttctaactcat |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33535967 |
tcatcactaccccaacacggaacttcaggattctttaacccttcaatttgatccaaagttagaaccctagcaccacaaagtttcactctttctaactcat |
33536066 |
T |
|
| Q |
228 |
caactctataaggtgtctgatcaatagacaaatcaactgcaacaatatcaccatctttccctttcttct |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33536067 |
caactctataaggtgtctgatcaatagacaaatcaactgcaacaatatcaccatctttccctttcttct |
33536135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 49024570 - 49024505
Alignment:
| Q |
52 |
actccttgtaaaagcagtaccagggtacatcccatttgggacccacaacctaggaggatcgccatc |
117 |
Q |
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|||||||||||| ||||| ||||| ||||||||||||||| |||||| || |||||||| ||||| |
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| T |
49024570 |
actccttgtaaatgcagttccaggaaacatcccatttgggagccacaatctcggaggatcaccatc |
49024505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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