View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_96 (Length: 338)

Name: NF0412_low_96
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_96
NF0412_low_96
[»] chr8 (11 HSPs)
chr8 (30-277)||(23770920-23771167)
chr8 (32-277)||(5019427-5019673)
chr8 (100-187)||(23771082-23771169)
chr8 (41-167)||(5004813-5004936)
chr8 (32-187)||(5004865-5005016)
chr8 (71-181)||(5004938-5005049)
chr8 (30-77)||(5019559-5019606)
chr8 (32-92)||(5004816-5004876)
chr8 (104-150)||(5019799-5019845)
chr8 (32-78)||(5019799-5019845)
chr8 (143-187)||(5005005-5005049)
[»] scaffold0275 (8 HSPs)
scaffold0275 (100-277)||(20941-21118)
scaffold0275 (32-154)||(11593-11715)
scaffold0275 (30-115)||(20943-21028)
scaffold0275 (30-82)||(11663-11715)
scaffold0275 (39-169)||(6069-6193)
scaffold0275 (104-187)||(11593-11676)
scaffold0275 (111-187)||(6069-6142)
scaffold0275 (111-169)||(11790-11848)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 277
Target Start/End: Complemental strand, 23771167 - 23770920
Alignment:
Q  30 ctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23771167 ctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataac 23771068  T
Q  130 aaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaacacataaataactcactaacacataaatttca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23771067 aaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaacacataaataactcactaacacataaatttca 23770968  T
Q  230 aacctataattgagtactttagtaactgctccaacattaataactgag 277  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23770967 aacctataattgagtacttcagtaactgctccaacattaataattgag 23770920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 32 - 277
Target Start/End: Complemental strand, 5019673 - 5019427
Alignment:
Q  32 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaa 131  Q
    ||||||||| ||||   |||||||||||||||||||||||||||||| |   ||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  5019673 aacaacatatgcagacccacaataacaaacatgcataaattagtcctac---aatacaattctcttgtagctaacaatataagcaggtacacaataacaa 5019577  T
Q  132 acatgcataaattagtcc----ttctacaatacgattctcttttagccaacaacataagccacacacgaacacataaataactcactaacacataaattt 227  Q
    ||||||||||||||||||    |||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||||    
T  5019576 acatgcataaattagtccaaccttctgcaatacgattctcttttagccaacaacataagctacgtacgaacacataaataacccactaacacataaattt 5019477  T
Q  228 caaacctataattgagtactttagtaactgctccaacattaataactgag 277  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  5019476 caaacctataattgagtacttcaataactgctccaacattaataattgag 5019427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 23771169 - 23771082
Alignment:
Q  100 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  23771169 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 23771082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 5004936 - 5004813
Alignment:
Q  41 agcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgcata 140  Q
    |||||||  ||||||| || ||||||||||||||||||||   ||||||||| ||||  ||| |||||||||||||||| ||| |||| |||||||||||    
T  5004936 agcaggtcgacaataataagcatgcataaattagtccttc---aatacaattctcttctagccaacaacataagcaggtccacgataataaacatgcata 5004840  T
Q  141 aattagtccttctacaatacgattctc 167  Q
     |||||| |||||||||||| ||||||    
T  5004839 cattagttcttctacaatacaattctc 5004813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 187
Target Start/End: Complemental strand, 5005016 - 5004865
Alignment:
Q  32 aacaacataagcaggtacacaataacaaacatgcataaattagtccttct-agaatacaattatcttgaagctaacaacataagcaggtacacaataaca 130  Q
    |||||||||||||||| |||||||| || ||||||||||||||| ||||| | ||||||| | ||||  ||  ||||||   |||||||  ||||||| |    
T  5005016 aacaacataagcaggtccacaataataatcatgcataaattagttcttctgaaaatacaaatctcttctaggcaacaact--agcaggtcgacaataata 5004919  T
Q  131 aacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 187  Q
    | ||||||||||||||||||||   ||||| |||||||| |||||||||||||||||    
T  5004918 agcatgcataaattagtccttc---aatacaattctcttctagccaacaacataagc 5004865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 5005049 - 5004938
Alignment:
Q  71 ttagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttct-acaatacgattctctt 169  Q
    |||||||||||  ||||||||| ||||  ||| |||||||||||||||| |||||||| || ||||||||||||||| ||||| | ||||| | ||||||    
T  5005049 ttagtccttctccaatacaattctcttatagccaacaacataagcaggtccacaataataatcatgcataaattagttcttctgaaaatacaaatctctt 5004950  T
Q  170 ttagccaacaac 181  Q
     ||| |||||||    
T  5004949 ctaggcaacaac 5004938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 5019606 - 5019559
Alignment:
Q  30 ctaacaacataagcaggtacacaataacaaacatgcataaattagtcc 77  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5019606 ctaacaatataagcaggtacacaataacaaacatgcataaattagtcc 5019559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 5004876 - 5004816
Alignment:
Q  32 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaatt 92  Q
    |||||||||||||||| ||| |||| ||||||||||| |||||| |||||| |||||||||    
T  5004876 aacaacataagcaggtccacgataataaacatgcatacattagttcttctacaatacaatt 5004816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 5019845 - 5019799
Alignment:
Q  104 aacaacataagcaggtacacaataacaaacatgcataaattagtcct 150  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||    
T  5019845 aacaacataagcagacccacaataacaaacatgcataaattagtcct 5019799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 5019845 - 5019799
Alignment:
Q  32 aacaacataagcaggtacacaataacaaacatgcataaattagtcct 78  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||    
T  5019845 aacaacataagcagacccacaataacaaacatgcataaattagtcct 5019799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 5005049 - 5005005
Alignment:
Q  143 ttagtccttctacaatacgattctcttttagccaacaacataagc 187  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||    
T  5005049 ttagtccttctccaatacaattctcttatagccaacaacataagc 5005005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 100 - 277
Target Start/End: Original strand, 20941 - 21118
Alignment:
Q  100 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaaca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20941 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaaca 21040  T
Q  200 cataaataactcactaacacataaatttcaaacctataattgagtactttagtaactgctccaacattaataactgag 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21041 cataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataactgag 21118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 11593 - 11715
Alignment:
Q  32 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaa 131  Q
    ||||||||||||||   |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11593 aacaacataagcagacccacagtaacgaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaa 11692  T
Q  132 acatgcataaattagtccttcta 154  Q
    |||||||||||||||||||||||    
T  11693 acatgcataaattagtccttcta 11715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 20943 - 21028
Alignment:
Q  30 ctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  20943 ctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 21028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 11663 - 11715
Alignment:
Q  30 ctaacaacataagcaggtacacaataacaaacatgcataaattagtccttcta 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11663 ctaacaacataagcaggtacacaataacaaacatgcataaattagtccttcta 11715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 6069 - 6193
Alignment:
Q  39 taagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagcaggtacacaataacaaacatgca 138  Q
    |||||||||  ||||||| || ||||||||||||||||||||   |||||| || ||||  ||| ||||||| |||||||| |||||||| |||||||||    
T  6069 taagcaggtcgacaataataagcatgcataaattagtccttc---aatacagttctcttatagccaacaacacaagcaggtccacaataataaacatgca 6165  T
Q  139 taaattagtccttctacaatacgattctctt 169  Q
    || |||||   ||||||||||| ||||||||    
T  6166 tacattag---ttctacaatacaattctctt 6193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 11593 - 11676
Alignment:
Q  104 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 187  Q
    ||||||||||||||   |||| |||| |||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  11593 aacaacataagcagacccacagtaacgaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 11676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 6069 - 6142
Alignment:
Q  111 taagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 187  Q
    |||||||||  ||||||| || ||||||||||||||||||||   |||||  ||||||| |||||||||||| ||||    
T  6069 taagcaggtcgacaataataagcatgcataaattagtccttc---aatacagttctcttatagccaacaacacaagc 6142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 11790 - 11848
Alignment:
Q  111 taagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctctt 169  Q
    |||||||||  ||||||| || |||||||| |||||||||||||| |||| ||||||||    
T  11790 taagcaggtcgacaataataagcatgcatatattagtccttctacgatacaattctctt 11848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1666 times since January 2019
Visitors: 3091