View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0414_low_1 (Length: 516)

Name: NF0414_low_1
Description: NF0414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0414_low_1
NF0414_low_1
[»] chr7 (2 HSPs)
chr7 (94-329)||(25771322-25771557)
chr7 (249-306)||(5542879-5542937)
[»] chr1 (1 HSPs)
chr1 (94-145)||(45302030-45302081)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 94 - 329
Target Start/End: Complemental strand, 25771557 - 25771322
Alignment:
Q  94 ctcttggacagaaatttgttgctgctctagatcattgaactcgttgctaatgtgttgatgcaagatggatgatcatttgttaagccgcctcaggttacca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25771557 ctcttggacagaaatttgttgctgctctagatcattgaactcgttgctaatgtgttgatgcaagatggatgatcatttgttaagccgcctcaggttacca 25771458  T
Q  194 tcttcacaagtttatgcgactcacactgtcacccagttctcctcgaacagcaaagtgttaaactacggttccatgtgtttaagcaacctctaggatacct 293  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25771457 tcttcacaagtttatgcgactcacactgtcacccaattctcctcgaacagcaaagtgttaaactacggttccatgtgtttaagcaacctctaggatacct 25771358  T
Q  294 ccactaaagatacacgaagctactatccacaatttt 329  Q
    ||||||||||||||||||||||||||||||||||||    
T  25771357 ccactaaagatacacgaagctactatccacaatttt 25771322  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 5542937 - 5542879
Alignment:
Q  249 tgttaaactacggttccatgtgttt-aagcaacctctaggatacctccactaaagatac 306  Q
    |||||||||||| || ||||||||| |||||||||||| |||| ||| |||||||||||    
T  5542937 tgttaaactacgatttcatgtgttttaagcaacctctaagataactcgactaaagatac 5542879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 45302030 - 45302081
Alignment:
Q  94 ctcttggacagaaatttgttgctgctctagatcattgaactcgttgctaatg 145  Q
    |||| |||||||||||||||| || ||||||||||  |||||||||||||||    
T  45302030 ctctcggacagaaatttgttgttgttctagatcatcaaactcgttgctaatg 45302081  T

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