View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415Ase1 (Length: 598)
Name: NF0415Ase1
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415Ase1 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 4e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 33526759 - 33526983
Alignment:
| Q |
9 |
gaatgtttatcgttgataatatatttcttgttnnnnnnnnnnnnnntttgtattaagtaagggtagaaaaataatatattaacttgatcctattcatact |
108 |
Q |
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| T |
33526759 |
gaatgtttatcgttgataatatatttcttgttaaaaaaataaaaaaattgtattaagcaagggtagaaaattaatatactaacttgatcctattcatact |
33526858 |
T |
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| Q |
109 |
agagtggggtatttttggtaagtttgtatttgactaaccgactgcaaatcacaaaacagtggtcgcattaaccgctagtttgcaaacaatctatgggggc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33526859 |
agagtggggtatttttggtaagtttgtatttgactaaccgactgcaaatcacaaaacagtggtcgcattaaccgctagtttgcaaacaatctatgggggc |
33526958 |
T |
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| Q |
209 |
gggaactcaactgcactaaacattg |
233 |
Q |
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||||||||||||||||||||||||| |
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| T |
33526959 |
gggaactcaactgcactaaacattg |
33526983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 457 - 592
Target Start/End: Original strand, 33527186 - 33527321
Alignment:
| Q |
457 |
ctccaaaacattatcttatcctttaatacagttaaaaacttttaactaacaatccccttatataattttccaccttcatactaatataacctcatttgag |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33527186 |
ctccaaaacattatcttatcctttaatacagttaaaaacttttaactaacaatccccttatataattttccactttcatactaatataacctcatttgag |
33527285 |
T |
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| Q |
557 |
tcaacaactactatttcattacataatttttaatta |
592 |
Q |
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| T |
33527286 |
tcaacaactactatttcattgcataatttttaatta |
33527321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 33527017 - 33527094
Alignment:
| Q |
292 |
agtccaactttactattaagtggcacaacatgaagcaataccatctaaactgcccattgttttcttttccactcttag |
369 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33527017 |
agtctaactttactattaagtggcacaacatgaagcaataccatctaaactgcccattgttttcttttctactcttag |
33527094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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