View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415Ase11 (Length: 327)
Name: NF0415Ase11
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415Ase11 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 907524 - 907272
Alignment:
| Q |
2 |
caacataatgttcttccacgaatggtagttcgaataagggcaaaagatgttcaacaagagaaatacttggaattttgatgaacccaacagtctaagctag |
101 |
Q |
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| T |
907524 |
caacctaatgttcttccacgaatggtagttcgaataagggcaaaagatgttcaacaagagaaatacttggaattttgatgaacccaacagtctaagctag |
907425 |
T |
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| Q |
102 |
taataatttatgagtgttggaagatttgaatttgtttcgatgcttttgggtgtagtctgggtatctgtgcgttgaaaaacaaagcctaatccctcgagca |
201 |
Q |
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| T |
907424 |
taataatttatgagtgttggaagatttgaatttgtttcgatgcttttgggtgtagtctgggtatttgtgcgtgcaaaagcaaagtctaatccctccagca |
907325 |
T |
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| Q |
202 |
gtgtaggactgtattgtgtggcaaagctctctctc--gagatttaacactcgt |
252 |
Q |
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| T |
907324 |
gtgtaggactgtattgggtggcaaagctctctttcaagagatttaacactcgt |
907272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 907221 - 907157
Alignment:
| Q |
257 |
tttacactgaaatggttgattgcataccgaaatctcattttacttttgcataatgttgaaaatta |
321 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
907221 |
tttacactgaaatggttgattgcataccaaaatctcattttacttttgcataatgttgaaaatta |
907157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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