View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0415Ase2 (Length: 389)
Name: NF0415Ase2
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415Ase2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 36292867 - 36293242
Alignment:
| Q |
8 |
gaatgtacaatctaagtaagtttaatctttttaaacaatgattgtataaagactgttcttattgaggctacgagtggcaacaccggcataggattggcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36292867 |
gaatgtacaatctaagtaagtttaatctttttaaacaatgattgtataaagactgttcttattgaggctacgagtggcaacaccggcataggattggcat |
36292966 |
T |
|
| Q |
108 |
cgatcgcagcactgagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtata |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36292967 |
cgatcgcagcactgagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtata |
36293066 |
T |
|
| Q |
208 |
tctgacagaccctgccaaaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36293067 |
tctgacagaccctgccaaaggagttgacggagtttttgaaaaggcatacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaat |
36293166 |
T |
|
| Q |
308 |
cctgtcaatccaaaggtattttcataattcatattgcctaatttggttgataggttgaaaaaagtttagtcgatta |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36293167 |
cctgtcaatccaaaggtattttcataattcatattgcctaatttggttgataggttgaaaaaagtttagtcgatta |
36293242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 36281387 - 36281727
Alignment:
| Q |
16 |
aatctaagtaagtttaatctttttaaacaatgattgtataaagactgttcttattgaggctacgagtggcaacaccggcataggattggcatcgatcgca |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | || ||||| ||||| |||||||||||||| ||||| ||| |
|
|
| T |
36281387 |
aatccaagtaagtttaatctttttaaacaatgtttgtataaagactgttcttgttgagccaacaagtggtaacactggcataggattggcgtcgatagca |
36281486 |
T |
|
| Q |
116 |
gcactgagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctgacag |
215 |
Q |
| |
|
||| |||| ||||||||||||||||| ||||||||| || | |||||||||| |||||||||||| || | ||||||||||||||||||||| |||||| |
|
|
| T |
36281487 |
gcaatgaggggctataaacttttagtgactatgccagctactatgagtcttgaaagaaaaattatactgcgagctttcggagccgaggtatatttgacag |
36281586 |
T |
|
| Q |
216 |
accctgccaaaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctgtcaa |
315 |
Q |
| |
|
|||||||||||||| |||| || |||||| | || ||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||| ||| ||| |
|
|
| T |
36281587 |
accctgccaaaggaattgatggtgtttttcagaaagcagacgagctattagcgaagacgcctaatagttataagctcaatcagtttgaaaactctgccaa |
36281686 |
T |
|
| Q |
316 |
tccaaaggtattttcataattcatattgcctaatttggttg |
356 |
Q |
| |
|
||||||||| || ||| | |||||||| |||||||||||| |
|
|
| T |
36281687 |
tccaaaggtgttatcacagttcatattttctaatttggttg |
36281727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 355
Target Start/End: Original strand, 36287318 - 36287665
Alignment:
| Q |
8 |
gaatgtacaatctaagtaagtttaatctttttaaacaatgattgtataaagactgttcttattgaggctacgagtggcaacaccggcataggattggcat |
107 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||||| ||||||||||| ||||||| ||||| | || ||||| ||||||||||| |||||||| | |
|
|
| T |
36287318 |
gaatgtatgatctaagtgaggttaatctttttaaacaatggttgtataaagagtgttcttgttgagccaacaagtggtaacaccggcattggattggcgt |
36287417 |
T |
|
| Q |
108 |
cgatcgcagcactgagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtata |
207 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||| | |||||| || ||||||||||||||||| |||| || | | ||||| ||||| |||||||| |
|
|
| T |
36287418 |
cgatagcagcaatgaggggctataaacttttagtgtcattgccattttatgtgagtcttgagagaagaattctactcagagcttttggagctgaggtata |
36287517 |
T |
|
| Q |
208 |
tctgacagaccctgccaaaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaat |
307 |
Q |
| |
|
||| ||||| |||||||||||| | || || |||||||| || || || |||||||||| ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
36287518 |
tctaacagatcctgccaaaggaatagatggtgtttttgagaaagcggaagagctattagagaagacgcctaatagttatatgttcaatcaatttgaaaat |
36287617 |
T |
|
| Q |
308 |
cctgtcaatccaaaggtattttcataattcatattgcctaatttggtt |
355 |
Q |
| |
|
|||| |||||| |||||||| |||| ||| ||||| |||||| ||||| |
|
|
| T |
36287618 |
cctgccaatccgaaggtattgtcattatttatatttcctaatatggtt |
36287665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1701 times since January 2019
Visitors: 3234